Wall clock time and date at job start Mon Mar 30 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30964 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46985 * 269.99824 * 3 2 1 5 5 H 1.48501 * 109.47177 * 30.00008 * 3 2 1 6 6 H 1.48502 * 109.46826 * 149.99793 * 3 2 1 7 7 C 1.39745 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99813 * 163.01474 * 7 2 1 9 9 C 1.41263 * 120.00192 * 343.01404 * 7 2 1 10 10 C 1.46622 * 120.43658 * 336.16457 * 9 7 2 11 11 C 1.35457 * 118.82517 * 179.97438 * 10 9 7 12 12 C 1.41267 * 119.85087 * 359.97438 * 11 10 9 13 13 C 1.38833 * 131.95520 * 180.28608 * 12 11 10 14 14 C 1.38955 * 107.58018 * 180.12917 * 13 12 11 15 15 N 1.31219 * 108.95167 * 359.60756 * 14 13 12 16 16 N 1.37056 * 121.02198 * 0.02562 * 12 11 10 17 17 C 1.35943 * 120.90410 * 0.02562 * 16 12 11 18 18 H 0.96997 * 119.99808 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.58817 * 0.02562 * 10 9 7 20 20 H 1.07992 * 120.07392 * 179.97438 * 11 10 9 21 21 H 1.08001 * 126.20958 * 359.97438 * 13 12 11 22 22 H 1.08001 * 125.51843 * 179.86896 * 14 13 12 23 23 H 1.07995 * 119.86347 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.4911 2.0464 -1.4001 5 1 1.4410 2.6527 0.7000 6 1 3.5411 1.4401 0.7001 7 6 2.0083 -1.2102 0.0005 8 1 3.0530 -1.2308 -0.2727 9 6 1.3482 -2.4068 0.3585 10 6 0.1508 -2.3702 1.2039 11 6 -0.4566 -3.5372 1.5267 12 6 0.0676 -4.7586 1.0482 13 6 -0.3446 -6.0739 1.2140 14 6 0.5470 -6.8837 0.5210 15 7 1.4544 -6.1271 -0.0501 16 7 1.1873 -4.7856 0.2583 17 6 1.8261 -3.6363 -0.0869 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2404 -1.4296 1.5621 20 1 -1.3395 -3.5338 2.1485 21 1 -1.2011 -6.4074 1.7810 22 1 0.4983 -7.9608 0.4587 23 1 2.7073 -3.6771 -0.7099 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213743372.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:38 Heat of formation + Delta-G solvation = 70.876377 kcal Electronic energy + Delta-G solvation = -10697.943280 eV Core-core repulsion = 8704.798796 eV Total energy + Delta-G solvation = -1993.144484 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.18953 -37.81711 -35.22978 -33.30751 -31.47218 -29.33646 -27.00074 -23.71892 -23.03845 -21.89926 -19.37798 -17.77589 -17.03994 -16.94003 -15.98364 -15.57227 -15.16257 -14.62351 -14.18924 -13.39171 -13.28062 -12.86984 -12.70112 -12.28860 -11.98366 -11.82022 -11.27236 -11.17023 -10.98382 -9.81490 -8.87873 -8.34177 -6.44997 0.42262 0.67997 1.41642 1.46902 1.57067 1.94517 2.07764 2.20293 2.52128 3.31329 3.85953 4.12367 4.34981 4.54365 4.72959 4.90954 5.03290 5.12376 5.20322 5.52432 5.60158 5.83159 6.10558 6.17460 6.45948 6.56785 6.77915 7.12470 8.16398 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.088507 B = 0.010625 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.283733 B = 2634.554454 C = 2884.363982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.041 3.959 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.258 1.258 7 C -0.469 4.469 8 H 0.088 0.912 9 C 0.072 3.928 10 C -0.077 4.077 11 C -0.137 4.137 12 C 0.036 3.964 13 C -0.320 4.320 14 C 0.034 3.966 15 N -0.399 5.399 16 N -0.229 5.229 17 C -0.150 4.150 18 H 0.299 0.701 19 H 0.143 0.857 20 H 0.157 0.843 21 H 0.167 0.833 22 H 0.215 0.785 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 0.860 2.987 3.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.176 4.176 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.106 0.894 9 C 0.067 3.933 10 C -0.100 4.100 11 C -0.156 4.156 12 C -0.088 4.088 13 C -0.350 4.350 14 C -0.138 4.138 15 N -0.228 5.228 16 N 0.008 4.992 17 C -0.276 4.276 18 H 0.110 0.890 19 H 0.161 0.839 20 H 0.175 0.825 21 H 0.184 0.816 22 H 0.231 0.769 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.643 0.870 2.197 2.449 hybrid contribution -0.330 0.504 0.245 0.650 sum -0.973 1.374 2.441 2.966 Atomic orbital electron populations 1.69824 1.08933 1.31817 1.33280 1.26805 0.95624 1.04621 0.90552 0.85024 0.79049 0.75031 0.79651 1.18767 1.18411 1.18192 1.19610 0.98418 0.90971 1.40815 0.89418 1.18669 0.92218 0.91254 0.91176 1.22759 0.94740 0.97940 0.94548 1.20665 1.02185 0.89203 1.03595 1.19973 0.91832 0.97133 0.99819 1.21437 1.08143 0.89198 1.16230 1.23996 0.92696 1.00958 0.96103 1.77467 1.28655 0.84725 1.31962 1.45677 1.17807 1.05512 1.30252 1.21324 1.07592 0.82137 1.16552 0.89004 0.83916 0.82523 0.81596 0.76884 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.59 10.88 21.80 0.24 -37.35 14 2 C 0.04 1.87 5.20 85.19 0.44 2.31 14 3 Si 0.99 34.00 29.59 68.60 2.03 36.03 14 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 5 H -0.26 -8.31 7.11 99.48 0.71 -7.61 14 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 14 7 C -0.47 -23.36 9.06 23.38 0.21 -23.15 14 8 H 0.09 4.21 7.90 -2.91 -0.02 4.18 14 9 C 0.07 3.75 5.69 -20.11 -0.11 3.64 14 10 C -0.08 -3.68 8.87 23.82 0.21 -3.47 14 11 C -0.14 -6.04 10.07 22.37 0.23 -5.82 14 12 C 0.04 1.73 6.78 39.21 0.27 2.00 14 13 C -0.32 -12.97 10.93 22.58 0.25 -12.73 14 14 C 0.03 1.35 11.95 84.96 1.02 2.36 14 15 N -0.40 -19.48 12.64 -57.42 -0.73 -20.20 14 16 N -0.23 -11.89 3.85 -184.76 -0.71 -12.60 14 17 C -0.15 -7.94 11.01 84.29 0.93 -7.02 14 18 H 0.30 12.21 8.30 -92.71 -0.77 11.44 14 19 H 0.14 6.64 6.27 -2.91 -0.02 6.62 14 20 H 0.16 5.59 8.06 -2.91 -0.02 5.57 14 21 H 0.17 5.41 8.06 -2.91 -0.02 5.38 14 22 H 0.21 6.22 8.06 -2.91 -0.02 6.19 14 23 H 0.13 6.77 8.06 -2.91 -0.02 6.75 14 Total: -1.00 -59.15 212.52 5.48 -53.67 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.22 Total: 22.32 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 3.43 Total: -41.87 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.20 Total: -70.16 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Total: -59.15 5.48 -53.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213743372.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.548 kcal (2) G-P(sol) polarization free energy of solvation -59.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds