Wall clock time and date at job start Mon Mar 30 2020 02:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31062 * 1 3 3 Si 1.86797 * 120.00248 * 2 1 4 4 H 1.48500 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47155 * 299.99779 * 3 2 1 6 6 H 1.48503 * 109.47143 * 60.00021 * 3 2 1 7 7 C 1.39679 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99502 * 169.02595 * 7 2 1 9 9 C 1.41239 * 120.00218 * 349.02728 * 7 2 1 10 10 C 1.37512 * 123.63927 * 159.57876 * 9 7 2 11 11 S 1.70433 * 110.68392 * 180.22153 * 10 9 7 12 12 C 1.75454 * 92.58465 * 359.68399 * 11 10 9 13 13 Cl 1.73595 * 124.56255 * 180.08470 * 12 11 10 14 14 C 1.32720 * 110.87294 * 0.32342 * 12 11 10 15 15 H 0.97007 * 119.99927 * 359.97438 * 1 2 3 16 16 H 1.07995 * 124.65997 * 359.95895 * 10 9 7 17 17 H 1.07995 * 123.42785 * 179.79099 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 3.7046 1.3462 0.0006 5 1 1.8860 2.3963 -1.2125 6 1 1.8860 2.3964 1.2125 7 6 2.0089 -1.2097 0.0005 8 1 3.0741 -1.2184 -0.1775 9 6 1.3220 -2.4216 0.2339 10 6 1.8063 -3.6548 -0.1343 11 16 0.7105 -4.8859 0.2996 12 6 -0.4214 -3.7417 0.9983 13 17 -1.9342 -4.1755 1.7310 14 6 0.0325 -2.4995 0.8868 15 1 -0.4850 0.8401 0.0004 16 1 2.7494 -3.8201 -0.6338 17 1 -0.5054 -1.6351 1.2469 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213760728.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:51 Heat of formation + Delta-G solvation = -9.076926 kcal Electronic energy + Delta-G solvation = -7496.838357 eV Core-core repulsion = 5772.421014 eV Total energy + Delta-G solvation = -1724.417343 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 187.976 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.39037 -37.31555 -34.67207 -30.50389 -27.54264 -23.55657 -20.82493 -19.13417 -17.43996 -17.08121 -15.66130 -14.48275 -14.29367 -13.82056 -13.51929 -13.22100 -12.97232 -12.46043 -12.19303 -12.03431 -11.58012 -11.32872 -10.96418 -9.33418 -9.01211 -8.65143 -6.35542 0.46443 0.62465 1.34627 1.40514 1.50338 1.56521 1.91698 2.08423 2.24697 3.26700 4.72378 5.06571 5.18996 5.28818 5.49656 5.89992 6.36187 6.69593 6.89002 8.32951 Molecular weight = 187.98amu Principal moments of inertia in cm(-1) A = 0.061263 B = 0.013335 C = 0.011154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.938606 B = 2099.172799 C = 2509.757737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.476 4.476 8 H 0.078 0.922 9 C 0.066 3.934 10 C -0.445 4.445 11 S 0.111 5.889 12 C -0.169 4.169 13 Cl -0.037 7.037 14 C -0.101 4.101 15 H 0.290 0.710 16 H 0.137 0.863 17 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -1.509 1.780 2.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.509 4.509 8 H 0.097 0.903 9 C 0.056 3.944 10 C -0.581 4.581 11 S 0.369 5.631 12 C -0.311 4.311 13 Cl -0.008 7.008 14 C -0.136 4.136 15 H 0.101 0.899 16 H 0.155 0.845 17 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.230 -2.963 1.669 3.616 hybrid contribution 0.158 2.187 0.098 2.195 sum -1.072 -0.776 1.767 2.207 Atomic orbital electron populations 1.69862 1.08753 1.30659 1.37139 1.26806 0.95723 1.04647 0.90956 0.84999 0.79112 0.75665 0.78968 1.18262 1.19050 1.18763 1.19416 0.96091 0.90726 1.44645 0.90341 1.18031 0.91033 0.93645 0.91708 1.24514 1.09292 0.96487 1.27786 1.81467 1.10459 1.09269 1.61909 1.25113 0.95169 0.98616 1.12183 1.98255 1.28382 1.92864 1.81333 1.21839 0.97119 0.95339 0.99328 0.89932 0.84517 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.81 10.72 21.79 0.23 -42.57 13 2 C 0.03 1.63 5.38 85.16 0.46 2.09 13 3 Si 0.99 37.64 29.57 68.60 2.03 39.66 13 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 13 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 13 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 13 7 C -0.48 -25.62 9.24 23.36 0.22 -25.40 13 8 H 0.08 4.10 7.87 -2.91 -0.02 4.08 13 9 C 0.07 3.60 5.68 -21.05 -0.12 3.48 13 10 C -0.44 -22.23 10.86 67.65 0.73 -21.49 13 11 S 0.11 4.77 23.01 -56.49 -1.30 3.47 13 12 C -0.17 -7.75 6.99 66.65 0.47 -7.29 13 13 Cl -0.04 -1.39 29.27 -2.72 -0.08 -1.47 13 14 C -0.10 -5.23 9.07 22.76 0.21 -5.02 13 15 H 0.29 13.33 8.30 -92.70 -0.77 12.56 13 16 H 0.14 6.55 8.06 -2.91 -0.02 6.53 13 17 H 0.14 7.67 6.28 -2.91 -0.02 7.65 13 Total: -1.00 -54.58 191.61 4.13 -50.45 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.29 Total: 4.08 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 1.96 Total: -53.63 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.23 Total: -42.57 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.47 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -54.58 4.13 -50.45 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213760728.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.373 kcal (2) G-P(sol) polarization free energy of solvation -54.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds