Wall clock time and date at job start Mon Mar 30 2020 02:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08999 * 108.83120 * 56.46938 * 11 10 9 13 13 C 1.52330 * 108.86747 * 175.00375 * 11 10 9 14 14 C 1.54253 * 112.59201 * 120.81918 * 13 11 10 15 15 S 1.83957 * 102.58114 * 24.52371 * 14 13 11 16 16 C 1.54261 * 108.86728 * 298.07443 * 11 10 9 17 17 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 18 18 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 19 19 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 20 20 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 21 21 H 1.09009 * 108.86382 * 241.63538 * 13 11 10 22 22 H 1.08994 * 108.87205 * 0.13770 * 13 11 10 23 23 H 1.09004 * 110.78913 * 142.79686 * 14 13 11 24 24 H 1.08994 * 110.78467 * 266.25422 * 14 13 11 25 25 H 1.09002 * 110.78615 * 332.92872 * 16 11 10 26 26 H 1.09002 * 110.78551 * 96.37673 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.4020 -4.7166 -0.8603 13 6 1.8348 -6.1273 -0.1256 14 6 1.5879 -7.0775 1.0642 15 16 -0.0562 -6.5289 1.6807 16 6 0.2166 -4.7527 1.2875 17 1 -0.4850 0.8401 0.0004 18 1 0.3554 -2.3881 0.0005 19 1 2.6845 -3.7147 -0.8894 20 1 2.6845 -3.7147 0.8905 21 1 1.5321 -6.6282 -1.0454 22 1 2.9002 -5.9043 -0.1808 23 1 1.5494 -8.1143 0.7298 24 1 2.3521 -6.9450 1.8300 25 1 0.7682 -4.2596 2.0880 26 1 -0.7312 -4.2477 1.1013 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228564253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:31 Heat of formation + Delta-G solvation = -20.866265 kcal Electronic energy + Delta-G solvation = -9639.206674 eV Core-core repulsion = 7842.953793 eV Total energy + Delta-G solvation = -1796.252881 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.52810 -35.62613 -32.89360 -30.43042 -27.77104 -25.77450 -23.58229 -20.89078 -19.16286 -17.40782 -17.07809 -16.37370 -15.63520 -15.24368 -14.94585 -14.31850 -13.92652 -13.32846 -13.07722 -12.80508 -12.74286 -12.40407 -12.29137 -12.11098 -11.75639 -11.38058 -11.00626 -10.76229 -9.02071 -8.75696 -7.96113 -5.25363 0.94711 1.36974 1.47595 1.50565 1.56732 2.55824 3.37401 3.55470 3.73353 3.91376 4.14867 4.21584 4.40407 4.48568 4.67878 4.73795 4.89277 4.94851 5.01632 5.23955 5.33551 5.48638 6.25848 7.32505 8.07556 8.30710 9.27309 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.086728 B = 0.008641 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.772571 B = 3239.434527 C = 3428.269990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.092 4.092 12 H 0.074 0.926 13 C -0.114 4.114 14 C -0.047 4.047 15 S -0.355 6.355 16 C -0.037 4.037 17 H 0.252 0.748 18 H 0.374 0.626 19 H 0.028 0.972 20 H 0.024 0.976 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.127 0.873 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -12.717 0.596 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.032 3.968 11 C -0.113 4.113 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.194 4.194 15 S -0.129 6.129 16 C -0.185 4.185 17 H 0.060 0.940 18 H 0.206 0.794 19 H 0.046 0.954 20 H 0.042 0.958 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.145 0.855 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.599 -13.244 1.102 13.769 hybrid contribution 0.634 1.829 -0.401 1.977 sum 4.233 -11.415 0.700 12.195 Atomic orbital electron populations 1.69809 1.06684 1.26225 1.59355 1.25577 0.96371 1.01174 1.03527 0.85198 0.77194 0.79041 0.78244 1.20279 1.22224 1.20340 1.19620 0.91584 0.85392 1.41518 0.90531 1.42601 1.05673 1.01201 1.89469 1.21043 0.93426 0.84272 0.98104 1.21834 0.96756 0.95719 0.96962 0.90779 1.21955 1.01853 0.92475 0.99027 1.24257 0.92536 1.03191 0.99432 1.87918 1.28732 1.10760 1.85521 1.24058 1.02740 0.92069 0.99650 0.93968 0.79385 0.95367 0.95797 0.89123 0.89024 0.85478 0.88327 0.90251 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.52 13.06 21.65 0.28 -59.24 15 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 15 3 Si 0.97 45.95 29.55 68.60 2.03 47.98 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.25 -13.88 9.99 84.04 0.84 -13.04 15 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 15 9 N -0.75 -37.55 5.36 -343.44 -1.84 -39.39 15 10 C 0.16 6.10 5.12 86.38 0.44 6.54 15 11 C -0.09 -2.86 2.72 -10.59 -0.03 -2.89 15 12 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 13 C -0.11 -2.54 5.98 30.80 0.18 -2.36 15 14 C -0.05 -0.96 7.46 72.41 0.54 -0.42 15 15 S -0.36 -10.34 23.27 -56.49 -1.31 -11.66 15 16 C -0.04 -1.23 6.28 72.41 0.45 -0.78 15 17 H 0.25 15.00 8.31 -92.71 -0.77 14.23 15 18 H 0.37 20.04 7.31 -92.71 -0.68 19.37 15 19 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.02 0.92 8.10 -2.38 -0.02 0.90 15 21 H 0.09 1.76 8.14 -2.38 -0.02 1.74 15 22 H 0.09 1.84 7.51 -2.39 -0.02 1.82 15 23 H 0.13 1.98 8.14 -2.38 -0.02 1.96 15 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.08 2.84 7.82 -2.39 -0.02 2.82 15 26 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -63.33 231.33 2.53 -60.80 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.48 Total: 18.24 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 2.90 Total: -16.73 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -1.56 Total: -98.63 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: -10.34 SS G_CDS: -1.31 Total: -11.66 kcal Total: -63.33 2.53 -60.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228564253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.935 kcal (2) G-P(sol) polarization free energy of solvation -63.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds