Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48497 * 109.47406 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47309 * 30.00364 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00304 * 3 2 1 7 7 C 1.37883 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99433 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.47906 * 111.00053 * 169.99958 * 10 9 7 12 12 C 1.53997 * 107.05871 * 145.84041 * 11 10 9 13 13 H 1.09002 * 110.30678 * 239.75776 * 12 11 10 14 14 O 1.42902 * 110.30397 * 117.69280 * 12 11 10 15 15 C 1.54592 * 105.13919 * 358.77740 * 12 11 10 16 16 H 1.09000 * 110.72471 * 96.40175 * 15 12 11 17 17 O 1.42902 * 110.72050 * 219.68206 * 15 12 11 18 18 C 1.48539 * 110.99900 * 287.39178 * 10 9 7 19 19 H 0.97005 * 119.99826 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47725 * 60.00453 * 9 7 2 21 21 H 1.09000 * 109.47298 * 299.99748 * 9 7 2 22 22 H 1.08998 * 109.91583 * 26.49115 * 11 10 9 23 23 H 1.09004 * 109.91554 * 265.19698 * 11 10 9 24 24 H 0.96698 * 114.00217 * 61.45744 * 14 12 11 25 25 H 0.96702 * 113.99670 * 179.97438 * 17 15 12 26 26 H 1.08996 * 110.66309 * 81.84546 * 18 10 9 27 27 H 1.08999 * 110.66346 * 318.71598 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5164 -4.9022 0.2393 12 6 2.2627 -5.9735 -0.5774 13 1 1.5882 -6.4395 -1.2957 14 8 2.8194 -6.9614 0.2922 15 6 3.3882 -5.2098 -1.3121 16 1 4.3257 -5.2798 -0.7605 17 8 3.5461 -5.7010 -2.6447 18 6 2.8665 -3.7509 -1.3239 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 0.4806 -4.8363 -0.0936 23 1 1.5533 -5.1511 1.2998 24 1 2.1618 -7.4432 0.8123 25 1 4.2400 -5.2545 -3.1489 26 1 3.6939 -3.0472 -1.4142 27 1 2.1471 -3.6060 -2.1298 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236573389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -93.896688 kcal Electronic energy + Delta-G solvation = -11745.051884 eV Core-core repulsion = 9502.879296 eV Total energy + Delta-G solvation = -2242.172589 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01373 -35.86499 -35.47224 -32.69726 -29.57439 -27.67281 -26.03460 -22.66551 -20.53476 -20.35806 -17.78774 -16.46670 -16.24977 -15.40578 -14.60355 -14.25193 -13.96721 -13.24852 -12.73294 -12.65695 -12.13121 -11.83842 -11.58183 -11.12798 -10.78256 -10.65046 -10.20663 -10.15094 -9.80904 -9.55968 -9.22795 -8.47817 -7.47718 -6.07030 -4.08906 3.29622 3.35835 3.40517 4.05787 4.38329 4.53177 4.96115 5.06109 5.26690 5.31001 5.49443 5.69831 5.85028 6.05507 6.27146 6.35966 6.45456 7.02161 7.19977 7.69439 7.77611 7.78222 7.93360 8.07381 8.42793 8.98438 9.55664 11.04046 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.064189 B = 0.009704 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.106014 B = 2884.743646 C = 3106.456129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.183 3.817 10 N -0.507 5.507 11 C 0.006 3.994 12 C 0.101 3.899 13 H 0.067 0.933 14 O -0.562 6.562 15 C 0.101 3.899 16 H 0.078 0.922 17 O -0.567 6.567 18 C 0.022 3.978 19 H 0.262 0.738 20 H -0.004 1.004 21 H 0.032 0.968 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.377 0.623 25 H 0.380 0.620 26 H 0.085 0.915 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -8.947 -2.108 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.058 3.942 10 N -0.233 5.233 11 C -0.123 4.123 12 C 0.042 3.958 13 H 0.085 0.915 14 O -0.367 6.367 15 C 0.042 3.958 16 H 0.096 0.904 17 O -0.372 6.372 18 C -0.107 4.107 19 H 0.072 0.928 20 H 0.014 0.986 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.224 0.776 25 H 0.228 0.772 26 H 0.104 0.896 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.269 -8.884 -1.763 10.013 hybrid contribution -0.451 1.063 -0.522 1.267 sum 3.818 -7.821 -2.285 8.998 Atomic orbital electron populations 1.69958 1.06110 1.26895 1.50913 1.25007 0.94897 0.99426 0.95328 0.86460 0.79810 0.82886 0.78058 1.20697 1.21196 1.19714 1.21116 0.93558 0.89785 1.50237 0.91845 1.19951 0.90126 0.87753 0.96390 1.64858 1.29752 1.02099 1.26600 1.23573 0.96693 0.91565 1.00495 1.22561 0.94141 0.88455 0.90685 0.91548 1.86494 1.38114 1.53315 1.58818 1.22730 0.98286 0.92316 0.82482 0.90393 1.86421 1.60844 1.64157 1.25805 1.23683 0.99885 0.94530 0.92596 0.92845 0.98643 0.95007 0.93603 0.90150 0.77598 0.77243 0.89634 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 15 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 15 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.51 -14.40 8.91 -34.44 -0.31 -14.70 15 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 9 C 0.18 4.82 4.47 -4.98 -0.02 4.80 15 10 N -0.51 -11.22 5.23 -231.88 -1.21 -12.44 15 11 C 0.01 0.11 6.47 -2.75 -0.02 0.09 15 12 C 0.10 1.66 4.12 -25.37 -0.10 1.55 15 13 H 0.07 1.05 8.08 -51.93 -0.42 0.63 15 14 O -0.56 -8.47 13.26 -35.23 -0.47 -8.93 15 15 C 0.10 1.71 4.18 -24.87 -0.10 1.60 15 16 H 0.08 1.32 8.08 -51.93 -0.42 0.90 15 17 O -0.57 -8.64 13.40 -35.23 -0.47 -9.11 15 18 C 0.02 0.43 5.84 -1.89 -0.01 0.42 15 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.00 -0.12 7.83 -51.93 -0.41 -0.52 15 21 H 0.03 0.89 8.08 -51.93 -0.42 0.47 15 22 H 0.05 0.84 7.77 -51.93 -0.40 0.43 15 23 H 0.08 1.39 7.96 -51.93 -0.41 0.97 15 24 H 0.38 3.80 9.11 45.56 0.41 4.22 15 25 H 0.38 4.01 9.12 45.56 0.42 4.42 15 26 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.05 1.00 7.81 -51.93 -0.41 0.60 15 LS Contribution 233.59 15.07 3.52 3.52 Total: -1.00 -32.51 233.59 -5.61 -38.11 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -2.03 Total: 3.07 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.66 Total: -4.78 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.48 Total: -38.46 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.94 Total: -18.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.51 -5.61 -38.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236573389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.785 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds