Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86796 * 119.99953 * 2 1 4 4 H 1.48496 * 109.47436 * 239.99958 * 3 2 1 5 5 H 1.48497 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47331 * 119.99858 * 3 2 1 7 7 C 1.40559 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.43208 * 119.99867 * 359.97438 * 7 2 1 10 10 C 3.52559 * 80.19909 * 179.97438 * 2 1 3 11 11 C 4.89461 * 74.40236 * 179.97438 * 2 1 3 12 12 C 1.40550 * 120.12821 * 213.32865 * 11 10 9 13 13 C 1.36477 * 119.86055 * 180.02562 * 12 11 10 14 14 C 1.39418 * 120.13375 * 359.97438 * 13 12 11 15 15 N 1.39040 * 119.86045 * 180.02562 * 14 13 12 16 16 C 1.39415 * 120.27227 * 0.27719 * 14 13 12 17 17 C 1.36467 * 120.13658 * 359.44308 * 16 14 13 18 18 H 0.97004 * 120.00171 * 359.97438 * 1 2 3 19 19 H 1.08001 * 120.07439 * 359.97438 * 12 11 10 20 20 H 1.07997 * 119.93287 * 179.97438 * 13 12 11 21 21 H 0.97001 * 120.00446 * 0.02562 * 15 14 13 22 22 H 0.97005 * 119.99828 * 179.72507 * 15 14 13 23 23 H 1.08003 * 119.92967 * 179.72629 * 16 14 13 24 24 H 1.08007 * 120.06869 * 180.25038 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0938 1.6965 -1.2124 5 1 1.2750 2.7464 0.0006 6 1 3.0938 1.6964 1.2125 7 6 2.0089 -1.2173 -0.0005 8 1 3.0889 -1.2173 -0.0001 9 6 1.2929 -2.4575 -0.0005 10 6 0.7059 -3.4741 0.0016 11 6 -0.0100 -4.7144 0.0021 12 6 0.5171 -5.8329 0.6703 13 6 -0.1696 -7.0123 0.6669 14 6 -1.3917 -7.1088 0.0029 15 7 -2.0867 -8.3131 0.0035 16 6 -1.9172 -6.0043 -0.6661 17 6 -1.2427 -4.8179 -0.6650 18 1 -0.4850 0.8401 0.0004 19 1 1.4639 -5.7595 1.1847 20 1 0.2346 -7.8727 1.1796 21 1 -1.7213 -9.0837 0.4655 22 1 -2.9391 -8.3813 -0.4545 23 1 -2.8622 -6.0865 -1.1824 24 1 -1.6528 -3.9618 -1.1803 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238577274.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = 51.363331 kcal Electronic energy + Delta-G solvation = -9821.480923 eV Core-core repulsion = 7892.916201 eV Total energy + Delta-G solvation = -1928.564722 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 187.069 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.56249 -34.32951 -33.47794 -30.91903 -30.37221 -27.86874 -25.27983 -21.94540 -21.64467 -18.52728 -16.72220 -16.33032 -15.96558 -15.05631 -13.62439 -13.45532 -13.03436 -12.77126 -12.70728 -11.84150 -11.47344 -11.29314 -10.95295 -10.60263 -10.34877 -10.31169 -9.58652 -8.57874 -8.36463 -8.11663 -6.70134 -6.57774 -4.41897 2.12564 2.18010 3.07383 3.11334 3.14376 3.96997 4.19468 4.27631 4.56238 5.04054 5.54181 5.57417 5.91456 5.98055 6.18735 6.24179 6.49642 6.79940 6.95981 7.06851 7.24835 7.49418 7.63911 7.94760 8.09917 8.20814 8.57691 8.87353 9.85769 10.41680 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.109164 B = 0.006876 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.433072 B = 4071.165702 C = 4278.181200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.076 3.924 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.065 3.935 10 C -0.393 4.393 11 C 0.060 3.940 12 C -0.095 4.095 13 C -0.186 4.186 14 C 0.170 3.830 15 N -0.887 5.887 16 C -0.185 4.185 17 C -0.088 4.088 18 H 0.280 0.720 19 H 0.115 0.885 20 H 0.109 0.891 21 H 0.391 0.609 22 H 0.391 0.609 23 H 0.110 0.890 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -8.719 -0.036 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.139 4.139 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.471 4.471 8 H 0.109 0.891 9 C 0.063 3.937 10 C -0.396 4.396 11 C 0.058 3.942 12 C -0.114 4.114 13 C -0.208 4.208 14 C 0.068 3.932 15 N -0.427 5.427 16 C -0.207 4.207 17 C -0.107 4.107 18 H 0.090 0.910 19 H 0.133 0.867 20 H 0.127 0.873 21 H 0.218 0.782 22 H 0.218 0.782 23 H 0.128 0.872 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.882 -8.500 -0.040 8.975 hybrid contribution 0.027 0.463 0.017 0.465 sum -2.855 -8.037 -0.023 8.529 Atomic orbital electron populations 1.69649 1.07617 1.29293 1.38054 1.25955 0.94885 1.00806 0.92293 0.86116 0.79579 0.79556 0.79832 1.18894 1.20350 1.18905 1.18237 0.93063 0.85389 1.50425 0.89104 1.19711 0.93300 0.90532 0.90159 1.18236 1.02943 0.95369 1.23012 1.16036 0.92538 0.89144 0.96458 1.20807 0.99528 0.91985 0.99057 1.20090 0.95895 0.98528 1.06313 1.17738 0.92250 0.86458 0.96774 1.42141 1.25606 1.10902 1.64035 1.20126 1.01535 0.92958 1.06079 1.20872 0.94673 0.96561 0.98605 0.90964 0.86730 0.87253 0.78243 0.78212 0.87202 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.37 13.26 55.58 0.74 -22.63 14 2 C 0.08 2.06 5.51 -17.20 -0.09 1.96 14 3 Si 0.93 19.53 29.57 -169.99 -5.03 14.50 14 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 14 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 14 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 14 7 C -0.44 -12.59 9.60 -36.78 -0.35 -12.95 14 8 H 0.09 2.40 7.85 -52.49 -0.41 1.99 14 9 C 0.06 1.95 13.02 -38.83 -0.51 1.44 14 10 C -0.39 -11.20 13.25 -38.84 -0.51 -11.71 14 11 C 0.06 1.45 5.79 -106.23 -0.61 0.83 14 12 C -0.09 -1.95 9.74 -39.35 -0.38 -2.34 14 13 C -0.19 -3.22 9.82 -39.78 -0.39 -3.61 14 14 C 0.17 2.79 6.76 -83.71 -0.57 2.22 14 15 N -0.89 -10.53 9.05 32.48 0.29 -10.23 14 16 C -0.18 -3.29 9.82 -39.78 -0.39 -3.68 14 17 C -0.09 -1.90 9.74 -39.35 -0.38 -2.28 14 18 H 0.28 7.19 8.29 -40.82 -0.34 6.85 14 19 H 0.11 2.24 8.06 -52.49 -0.42 1.82 14 20 H 0.11 1.57 8.06 -52.49 -0.42 1.14 14 21 H 0.39 3.79 8.83 -40.82 -0.36 3.43 14 22 H 0.39 3.84 8.83 -40.82 -0.36 3.48 14 23 H 0.11 1.65 8.06 -52.48 -0.42 1.22 14 24 H 0.12 2.55 8.06 -52.48 -0.42 2.13 14 LS Contribution 232.30 15.07 3.50 3.50 Total: -1.00 -31.59 232.30 -6.65 -38.24 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.96 Total: 6.72 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -4.20 Total: -30.10 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 1.03 Total: -32.86 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.59 -6.65 -38.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238577274.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.604 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds