Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30536 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47328 * 240.00058 * 3 2 1 5 5 H 1.48506 * 109.46674 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99721 * 3 2 1 7 7 C 1.40664 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.43205 * 119.99930 * 359.97438 * 7 2 1 10 10 C 3.52640 * 80.20923 * 180.02562 * 2 1 3 11 11 C 4.89535 * 74.40906 * 180.02562 * 2 1 3 12 12 C 1.40431 * 120.17933 * 41.52022 * 11 10 9 13 13 C 1.37753 * 119.92614 * 179.97438 * 12 11 10 14 14 C 1.38428 * 120.29703 * 359.74802 * 13 12 11 15 15 C 1.39192 * 120.36243 * 0.51246 * 14 13 12 16 16 N 1.39695 * 119.96287 * 179.76453 * 15 14 13 17 17 C 1.38423 * 120.06843 * 359.48486 * 15 14 13 18 18 H 0.96993 * 120.00311 * 0.02562 * 1 2 3 19 19 H 1.08002 * 120.03851 * 359.96005 * 12 11 10 20 20 H 1.08002 * 119.85139 * 180.02562 * 13 12 11 21 21 H 1.07999 * 119.82270 * 180.28116 * 14 13 12 22 22 H 0.97005 * 119.99709 * 179.72501 * 16 15 14 23 23 H 0.96995 * 120.00153 * 359.44906 * 16 15 14 24 24 H 1.08003 * 120.15107 * 180.22752 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0932 1.6964 -1.2125 5 1 1.2743 2.7464 0.0006 6 1 3.0931 1.6963 1.2125 7 6 2.0087 -1.2182 -0.0005 8 1 3.0887 -1.2182 -0.0001 9 6 1.2926 -2.4584 -0.0005 10 6 0.7057 -3.4750 -0.0016 11 6 -0.0104 -4.7152 -0.0021 12 6 -1.1503 -4.8719 -0.8071 13 6 -1.8348 -6.0673 -0.8040 14 6 -1.4012 -7.1183 -0.0143 15 6 -0.2760 -6.9746 0.7924 16 7 0.1513 -8.0390 1.5897 17 6 0.4233 -5.7800 0.8009 18 1 -0.4850 0.8400 -0.0004 19 1 -1.4901 -4.0559 -1.4278 20 1 -2.7112 -6.1865 -1.4239 21 1 -1.9411 -8.0536 -0.0212 22 1 0.9378 -7.9408 2.1490 23 1 -0.3406 -8.8750 1.5871 24 1 1.2987 -5.6683 1.4235 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238618919.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = 49.973764 kcal Electronic energy + Delta-G solvation = -9843.280469 eV Core-core repulsion = 7914.655491 eV Total energy + Delta-G solvation = -1928.624978 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 187.069 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.42218 -34.19364 -33.57316 -31.63449 -29.30904 -27.87324 -25.66923 -22.19812 -21.29288 -18.59539 -16.80241 -16.28412 -15.32560 -15.14665 -14.13572 -13.42629 -13.14143 -12.74921 -12.64598 -11.81987 -11.32723 -11.21593 -10.84437 -10.60212 -10.43210 -10.29426 -9.72767 -8.98741 -8.31797 -7.46404 -6.92158 -6.72693 -4.53057 2.00673 2.33689 3.04067 3.08293 3.11341 3.92478 4.15954 4.26039 4.51465 5.06793 5.59646 5.68232 5.82954 5.97593 6.20601 6.26651 6.57870 6.72090 6.94920 7.16565 7.23554 7.47004 7.64895 7.97823 8.11916 8.17261 8.49415 8.80006 9.76315 10.34867 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.080877 B = 0.007283 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.120787 B = 3843.895886 C = 4106.767903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.077 3.923 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.442 4.442 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.405 4.405 11 C 0.158 3.842 12 C -0.185 4.185 13 C -0.070 4.070 14 C -0.237 4.237 15 C 0.215 3.785 16 N -0.887 5.887 17 C -0.215 4.215 18 H 0.282 0.718 19 H 0.115 0.885 20 H 0.112 0.888 21 H 0.106 0.894 22 H 0.393 0.607 23 H 0.391 0.609 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -8.032 1.083 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.140 4.140 3 Si 0.750 3.250 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.111 0.889 9 C 0.079 3.921 10 C -0.408 4.408 11 C 0.157 3.843 12 C -0.205 4.205 13 C -0.088 4.088 14 C -0.260 4.260 15 C 0.112 3.888 16 N -0.427 5.427 17 C -0.237 4.237 18 H 0.092 0.908 19 H 0.133 0.867 20 H 0.130 0.870 21 H 0.125 0.875 22 H 0.220 0.780 23 H 0.218 0.782 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.157 -7.824 1.043 7.977 hybrid contribution 0.343 0.486 0.254 0.646 sum -0.815 -7.338 1.296 7.496 Atomic orbital electron populations 1.69614 1.07686 1.29535 1.37280 1.25992 0.94900 1.00909 0.92151 0.86089 0.79591 0.79370 0.79905 1.18801 1.20264 1.18839 1.18297 0.93169 0.85311 1.50511 0.88881 1.19755 0.92518 0.90311 0.89513 1.18244 1.03210 0.95494 1.23842 1.15877 0.90356 0.87878 0.90223 1.21155 0.98144 0.97815 1.03364 1.20618 0.98187 0.92722 0.97294 1.20345 1.00380 1.00054 1.05173 1.17563 0.92949 0.87681 0.90562 1.42373 1.34662 1.14581 1.51113 1.20696 1.03687 0.92928 1.06430 0.90777 0.86730 0.87035 0.87545 0.77954 0.78206 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.01 13.26 55.59 0.74 -22.28 14 2 C 0.08 2.05 5.51 -17.19 -0.09 1.96 14 3 Si 0.93 19.26 29.57 -169.99 -5.03 14.24 14 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 14 7 C -0.44 -12.51 9.61 -36.74 -0.35 -12.86 14 8 H 0.09 2.42 7.86 -52.49 -0.41 2.01 14 9 C 0.08 2.41 13.02 -38.84 -0.51 1.90 14 10 C -0.41 -11.54 13.25 -38.84 -0.51 -12.05 14 11 C 0.16 3.83 5.77 -106.39 -0.61 3.22 14 12 C -0.18 -4.04 9.79 -38.93 -0.38 -4.42 14 13 C -0.07 -1.25 10.02 -39.69 -0.40 -1.65 14 14 C -0.24 -4.01 9.89 -39.16 -0.39 -4.39 14 15 C 0.21 3.78 6.74 -83.85 -0.57 3.21 14 16 N -0.89 -11.55 9.09 32.38 0.29 -11.26 14 17 C -0.21 -4.50 9.63 -38.76 -0.37 -4.88 14 18 H 0.28 7.15 8.29 -40.82 -0.34 6.81 14 19 H 0.11 2.52 8.06 -52.49 -0.42 2.10 14 20 H 0.11 1.66 8.06 -52.49 -0.42 1.23 14 21 H 0.11 1.48 8.06 -52.49 -0.42 1.06 14 22 H 0.39 4.52 8.84 -40.82 -0.36 4.15 14 23 H 0.39 4.04 8.84 -40.82 -0.36 3.68 14 24 H 0.11 2.28 8.06 -52.48 -0.42 1.85 14 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -31.26 232.53 -6.64 -37.90 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -1.96 Total: 7.86 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -4.19 Total: -29.97 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 1.03 Total: -33.54 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.26 -6.64 -37.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618919.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.871 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds