Wall clock time and date at job start Mon Mar 30 2020 01:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86801 * 120.00098 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00408 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00457 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00069 * 3 2 1 7 7 C 1.40584 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99684 * 359.72085 * 7 2 1 9 9 C 1.43205 * 119.99909 * 180.02562 * 7 2 1 10 10 C 3.52576 * 159.79931 * 180.02562 * 2 1 3 11 11 C 4.89477 * 165.59770 * 180.02562 * 2 1 3 12 12 C 1.40429 * 120.27552 * 267.08421 * 11 10 9 13 13 C 1.37562 * 119.85628 * 180.02562 * 12 11 10 14 14 C 1.38785 * 120.42361 * 359.97438 * 13 12 11 15 15 C 1.38140 * 120.55870 * 0.02562 * 14 13 12 16 16 C 1.38730 * 120.13261 * 359.71197 * 15 14 13 17 17 N 1.38898 * 120.21297 * 180.30394 * 16 15 14 18 18 H 0.97004 * 119.99592 * 359.97438 * 1 2 3 19 19 H 1.08007 * 120.06783 * 359.97438 * 12 11 10 20 20 H 1.08003 * 119.78606 * 179.97438 * 13 12 11 21 21 H 1.07995 * 119.71604 * 179.97438 * 14 13 12 22 22 H 1.07999 * 119.92994 * 179.97438 * 15 14 13 23 23 H 0.97003 * 119.99720 * 180.25962 * 17 16 15 24 24 H 0.96996 * 120.00129 * 0.25446 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4874 2.0465 -1.4000 5 1 1.4374 2.6526 0.7001 6 1 3.5375 1.4401 0.7000 7 6 2.0088 -1.2175 -0.0005 8 1 1.4688 -2.1527 0.0036 9 6 3.4409 -1.2175 0.0000 10 6 4.6148 -1.2175 -0.0005 11 6 6.0469 -1.2175 -0.0005 12 6 6.7549 -1.1558 1.2106 13 6 8.1304 -1.1557 1.2006 14 6 8.8245 -1.2169 0.0003 15 6 8.1456 -1.2781 -1.2012 16 6 6.7584 -1.2850 -1.2178 17 7 6.0741 -1.3528 -2.4246 18 1 -0.4850 0.8401 0.0004 19 1 6.2204 -1.1076 2.1480 20 1 8.6738 -1.1078 2.1327 21 1 9.9044 -1.2157 0.0056 22 1 8.6958 -1.3249 -2.1293 23 1 5.1041 -1.3536 -2.4327 24 1 6.5661 -1.3993 -3.2592 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238637408.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:41 Heat of formation + Delta-G solvation = 30.957389 kcal Electronic energy + Delta-G solvation = -10096.515030 eV Core-core repulsion = 8167.065440 eV Total energy + Delta-G solvation = -1929.449590 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 187.069 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.01288 -35.70714 -35.31681 -33.93942 -31.32023 -29.51359 -27.52839 -23.72611 -22.76730 -20.43121 -18.47734 -17.74181 -17.43989 -16.89059 -15.18720 -15.02592 -14.80252 -14.56822 -14.30090 -13.89894 -13.32142 -13.24555 -12.49612 -12.06966 -11.96832 -11.66749 -11.53009 -11.22286 -10.74506 -9.30154 -8.80970 -8.14386 -6.72101 0.33188 0.81475 1.18138 1.23685 1.41594 2.00369 2.13787 2.50935 3.11857 3.30229 3.40715 3.96519 4.15624 4.34697 4.65478 4.75404 4.89314 5.16630 5.32985 5.51894 5.71289 5.79337 5.96113 6.11851 6.38726 6.64230 6.70631 7.05095 7.48286 8.27524 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.054841 B = 0.009913 C = 0.009581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.447923 B = 2823.840015 C = 2921.679186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.058 3.942 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.253 1.253 6 H -0.270 1.270 7 C -0.463 4.463 8 H 0.066 0.934 9 C -0.038 4.038 10 C -0.347 4.347 11 C -0.056 4.056 12 C -0.083 4.083 13 C -0.182 4.182 14 C -0.070 4.070 15 C -0.203 4.203 16 C 0.211 3.789 17 N -0.865 5.865 18 H 0.295 0.705 19 H 0.110 0.890 20 H 0.144 0.856 21 H 0.158 0.842 22 H 0.149 0.851 23 H 0.396 0.604 24 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.601 1.756 -2.432 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.154 4.154 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.176 1.176 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.084 0.916 9 C -0.040 4.040 10 C -0.350 4.350 11 C -0.060 4.060 12 C -0.102 4.102 13 C -0.202 4.202 14 C -0.089 4.089 15 C -0.225 4.225 16 C 0.104 3.896 17 N -0.403 5.403 18 H 0.106 0.894 19 H 0.128 0.872 20 H 0.162 0.838 21 H 0.176 0.824 22 H 0.166 0.834 23 H 0.224 0.776 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 15.346 1.862 -2.430 15.648 hybrid contribution -0.820 0.288 -0.212 0.894 sum 14.526 2.149 -2.641 14.920 Atomic orbital electron populations 1.69460 1.08473 1.31210 1.40463 1.26455 0.95389 1.03101 0.90420 0.85503 0.79228 0.77188 0.80219 1.18144 1.17647 1.19403 1.17961 0.84392 0.94631 1.52547 0.91561 1.20011 0.91371 0.99216 0.93399 1.18959 0.91437 1.02788 1.21798 1.16056 0.85659 1.11055 0.93264 1.21380 0.95233 0.97639 0.95948 1.21057 0.92506 1.06944 0.99659 1.21370 1.00957 0.95598 0.90953 1.20808 0.90300 1.11067 1.00364 1.18328 0.92226 0.93169 0.85873 1.42349 1.09544 1.83174 1.05238 0.89428 0.87193 0.83777 0.82437 0.83366 0.77625 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.46 13.92 21.95 0.31 -49.16 14 2 C 0.06 3.32 5.53 85.45 0.47 3.79 14 3 Si 0.96 44.82 28.00 68.60 1.92 46.74 14 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 14 5 H -0.25 -10.64 7.11 99.48 0.71 -9.94 14 6 H -0.27 -13.43 7.03 99.48 0.70 -12.73 14 7 C -0.46 -28.20 10.19 24.09 0.25 -27.95 14 8 H 0.07 4.28 8.06 -2.91 -0.02 4.25 14 9 C -0.04 -2.18 11.41 30.02 0.34 -1.84 14 10 C -0.35 -18.20 12.05 30.02 0.36 -17.84 14 11 C -0.06 -2.41 5.80 -20.78 -0.12 -2.53 14 12 C -0.08 -3.11 9.79 22.64 0.22 -2.89 14 13 C -0.18 -5.12 10.02 22.24 0.22 -4.89 14 14 C -0.07 -1.71 10.03 22.38 0.22 -1.48 14 15 C -0.20 -5.48 9.87 22.36 0.22 -5.26 14 16 C 0.21 7.50 6.78 38.86 0.26 7.77 14 17 N -0.87 -27.71 8.99 -50.56 -0.45 -28.16 14 18 H 0.30 15.01 8.29 -92.71 -0.77 14.24 14 19 H 0.11 4.12 8.06 -2.91 -0.02 4.10 14 20 H 0.14 3.10 8.06 -2.91 -0.02 3.08 14 21 H 0.16 2.48 8.06 -2.91 -0.02 2.46 14 22 H 0.15 2.95 8.06 -2.91 -0.02 2.93 14 23 H 0.40 14.56 7.71 -92.71 -0.71 13.85 14 24 H 0.41 9.53 8.84 -92.71 -0.82 8.71 14 Total: -1.00 -67.42 228.74 3.92 -63.50 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.31 Total: 20.20 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 2.45 Total: -53.13 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.15 Total: -77.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.92 Total: 46.74 kcal Total: -67.42 3.92 -63.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238637408.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.458 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds