Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99825 * 2 1 4 4 H 1.48493 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47203 * 300.00521 * 3 2 1 6 6 H 1.48507 * 109.47373 * 60.00266 * 3 2 1 7 7 C 1.37870 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99478 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00456 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.22081 * 58.06694 * 9 7 2 11 11 N 1.46770 * 110.31520 * 296.08994 * 9 7 2 12 12 C 1.34424 * 111.29761 * 223.94240 * 11 9 7 13 13 O 1.21277 * 124.93647 * 180.44591 * 12 11 9 14 14 C 1.51278 * 110.11729 * 0.40937 * 12 11 9 15 15 H 1.08999 * 110.48546 * 134.93122 * 14 12 11 16 16 O 1.42900 * 110.48438 * 257.57193 * 14 12 11 17 17 C 1.54480 * 110.24885 * 180.02562 * 9 7 2 18 18 H 1.09002 * 110.96791 * 262.61969 * 17 9 7 19 19 O 1.42907 * 110.96885 * 26.34601 * 17 9 7 20 20 H 0.96997 * 120.00516 * 359.97438 * 1 2 3 21 21 H 0.96998 * 124.35012 * 43.96767 * 11 9 7 22 22 H 0.96695 * 114.00401 * 294.77132 * 16 14 12 23 23 H 0.96701 * 114.00022 * 176.91331 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5945 -2.5543 -0.8700 11 7 0.4716 -2.6386 1.2341 12 6 0.5847 -3.8766 1.7455 13 8 0.0377 -4.2630 2.7566 14 6 1.4928 -4.7179 0.8760 15 1 2.1983 -5.2773 1.4903 16 8 0.7239 -5.6052 0.0614 17 6 2.2390 -3.6867 -0.0015 18 1 2.3887 -4.0698 -1.0109 19 8 3.4849 -3.3154 0.5919 20 1 -0.4851 0.8400 0.0004 21 1 -0.0575 -1.9289 1.6305 22 1 0.2348 -6.2733 0.5608 23 1 4.1209 -4.0409 0.6576 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238720415.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -133.461440 kcal Electronic energy + Delta-G solvation = -11860.623015 eV Core-core repulsion = 9480.901676 eV Total energy + Delta-G solvation = -2379.721340 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 187.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.69878 -36.53302 -35.65044 -34.39368 -32.28803 -28.47326 -27.36459 -23.74928 -20.51008 -19.93535 -17.70701 -17.05501 -16.33695 -15.70591 -14.72241 -14.39513 -14.32344 -13.29179 -13.21983 -12.67238 -12.32572 -11.92341 -11.46212 -11.02816 -10.78336 -10.51860 -9.98676 -9.73930 -9.44548 -8.86314 -8.58747 -7.77253 -6.26829 -4.34085 3.20949 3.28990 3.30649 3.36582 4.28584 4.37098 4.48893 4.90728 5.03298 5.20897 5.55822 5.57124 6.11099 6.25479 7.15309 7.67952 7.74829 7.80389 7.96263 8.22360 8.34905 8.84032 9.27926 9.36887 10.81551 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.054619 B = 0.014123 C = 0.012670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.518926 B = 1982.055177 C = 2209.418114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.082 0.918 9 C 0.256 3.744 10 H 0.061 0.939 11 N -0.672 5.672 12 C 0.476 3.524 13 O -0.580 6.580 14 C 0.040 3.960 15 H 0.079 0.921 16 O -0.544 6.544 17 C 0.103 3.897 18 H 0.079 0.921 19 O -0.526 6.526 20 H 0.267 0.733 21 H 0.413 0.587 22 H 0.381 0.619 23 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -6.091 -1.127 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.101 0.899 9 C 0.155 3.845 10 H 0.079 0.921 11 N -0.324 5.324 12 C 0.259 3.741 13 O -0.463 6.463 14 C -0.023 4.023 15 H 0.097 0.903 16 O -0.349 6.349 17 C 0.043 3.957 18 H 0.096 0.904 19 O -0.329 6.329 20 H 0.076 0.924 21 H 0.253 0.747 22 H 0.229 0.771 23 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.546 -5.271 -1.166 6.459 hybrid contribution 0.139 0.311 0.638 0.724 sum 3.686 -4.960 -0.528 6.202 Atomic orbital electron populations 1.69895 1.06093 1.27559 1.49595 1.25166 0.94993 0.99976 0.93775 0.86320 0.80255 0.82577 0.77593 1.19395 1.20864 1.20939 1.21298 0.94434 0.88845 1.50807 0.89947 1.19534 0.87628 0.92818 0.84514 0.92146 1.47116 1.47049 1.11378 1.26889 1.21406 0.82624 0.84976 0.85116 1.90628 1.52522 1.76634 1.26507 1.23352 0.93764 0.91589 0.93607 0.90334 1.86480 1.65866 1.46750 1.35817 1.22685 0.84832 0.93985 0.94182 0.90351 1.86861 1.24161 1.37659 1.84231 0.92361 0.74678 0.77119 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 12.38 55.43 0.69 -23.52 14 2 C 0.06 1.70 5.40 -17.82 -0.10 1.60 14 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 14 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 14 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 14 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.52 -13.46 8.42 -34.44 -0.29 -13.75 14 8 H 0.08 2.18 6.67 -52.48 -0.35 1.83 14 9 C 0.26 6.16 3.28 -68.16 -0.22 5.94 14 10 H 0.06 1.54 8.14 -51.93 -0.42 1.12 14 11 N -0.67 -16.37 5.70 -53.88 -0.31 -16.67 14 12 C 0.48 10.90 8.11 -10.86 -0.09 10.81 14 13 O -0.58 -14.56 18.03 5.56 0.10 -14.46 14 14 C 0.04 0.74 4.05 -26.76 -0.11 0.63 14 15 H 0.08 1.27 8.11 -51.93 -0.42 0.85 14 16 O -0.54 -9.16 13.37 -35.23 -0.47 -9.63 14 17 C 0.10 2.03 4.08 -25.12 -0.10 1.93 14 18 H 0.08 1.41 8.10 -51.93 -0.42 0.99 14 19 O -0.53 -9.87 11.68 -35.23 -0.41 -10.28 14 20 H 0.27 6.89 8.31 -40.82 -0.34 6.55 14 21 H 0.41 10.62 8.13 -40.82 -0.33 10.29 14 22 H 0.38 4.92 9.12 45.56 0.42 5.33 14 23 H 0.36 4.57 9.12 45.56 0.42 4.98 14 LS Contribution 211.04 15.07 3.18 3.18 Total: -1.00 -31.05 211.04 -3.40 -34.45 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.25 Total: 14.21 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.91 Total: 7.15 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.38 Total: -40.19 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.78 Total: -34.37 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -31.05 -3.40 -34.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238720415.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.009 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds