Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 110.33209 * 60.51994 * 9 7 2 11 11 C 1.54907 * 110.37154 * 182.89284 * 9 7 2 12 12 C 1.55144 * 101.64962 * 155.89975 * 11 9 7 13 13 H 1.08998 * 110.85843 * 82.79859 * 12 11 9 14 14 C 1.52999 * 110.70269 * 205.96451 * 12 11 9 15 15 S 1.81405 * 109.47065 * 180.02562 * 14 12 11 16 16 C 1.54318 * 103.01720 * 324.34453 * 12 11 9 17 17 N 1.47444 * 107.23644 * 22.28852 * 16 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.08997 * 110.98781 * 273.98963 * 11 9 7 20 20 H 1.08997 * 110.99074 * 37.80497 * 11 9 7 21 21 H 1.09004 * 109.47196 * 300.05323 * 14 12 11 22 22 H 1.09001 * 109.47547 * 60.05078 * 14 12 11 23 23 H 1.34503 * 102.99944 * 179.97438 * 15 14 12 24 24 H 1.09000 * 109.88830 * 262.87947 * 16 12 11 25 25 H 1.09005 * 110.02336 * 141.77181 * 16 12 11 26 26 H 1.00899 * 110.99612 * 238.72124 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6298 -2.5739 -0.8979 11 6 2.2369 -3.6916 0.0697 12 6 1.3389 -4.8032 0.6738 13 1 0.7426 -5.2844 -0.1015 14 6 2.1851 -5.8354 1.4216 15 16 1.1037 -7.1177 2.1124 16 6 0.4350 -4.0257 1.6535 17 7 0.4199 -2.6191 1.2115 18 1 -0.4850 0.8401 -0.0004 19 1 2.5886 -3.9705 -0.9235 20 1 3.0744 -3.4647 0.7294 21 1 2.8954 -6.2914 0.7318 22 1 2.7275 -5.3441 2.2294 23 1 1.9685 -7.9422 2.7301 24 1 0.8391 -4.0927 2.6636 25 1 -0.5762 -4.4323 1.6312 26 1 0.7556 -2.0075 1.9404 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238724169.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = -25.444392 kcal Electronic energy + Delta-G solvation = -9824.320929 eV Core-core repulsion = 8027.869525 eV Total energy + Delta-G solvation = -1796.451403 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.37739 -34.81552 -32.52817 -30.28236 -27.27848 -25.60986 -21.75735 -21.13200 -18.72910 -17.96379 -16.71856 -16.64881 -15.93699 -15.00937 -14.40550 -14.14747 -13.76377 -13.70697 -13.19732 -12.73743 -12.34595 -12.15899 -11.96829 -11.67703 -11.46046 -11.21148 -10.88286 -10.55882 -9.02387 -8.65674 -8.02663 -6.23400 0.67057 1.46514 1.47031 1.54909 1.83790 2.46797 3.20982 3.71671 3.81783 4.08052 4.28567 4.46729 4.57319 4.73532 4.74576 5.07673 5.16110 5.20663 5.38325 5.69200 5.89469 6.12786 6.59727 7.02684 7.19186 7.49238 9.01733 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.099772 B = 0.009060 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.572705 B = 3089.672149 C = 3219.990884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.028 3.972 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.207 3.793 10 H 0.002 0.998 11 C -0.123 4.123 12 C -0.085 4.085 13 H 0.078 0.922 14 C -0.040 4.040 15 S -0.271 6.271 16 C 0.056 3.944 17 N -0.682 5.682 18 H 0.258 0.742 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.100 0.900 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -9.351 3.292 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.175 4.175 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.601 4.601 8 H 0.076 0.924 9 C 0.099 3.901 10 H 0.020 0.980 11 C -0.164 4.164 12 C -0.106 4.106 13 H 0.097 0.903 14 C -0.188 4.188 15 S -0.119 6.119 16 C -0.074 4.074 17 N -0.311 5.311 18 H 0.067 0.933 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.118 0.882 22 H 0.106 0.894 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.621 -9.801 3.207 10.930 hybrid contribution 2.297 0.930 0.374 2.506 sum 5.919 -8.871 3.581 11.250 Atomic orbital electron populations 1.70235 1.07209 1.26940 1.48343 1.25803 0.95464 1.02292 0.93982 0.85717 0.78368 0.79263 0.78791 1.19802 1.21363 1.19476 1.21532 0.92957 0.91799 1.53767 0.92414 1.19788 0.88446 0.92320 0.89519 0.98001 1.23115 0.98108 0.94899 1.00242 1.22091 0.96497 0.94240 0.97781 0.90337 1.23127 0.98354 0.95213 1.02139 1.87716 1.20003 1.32023 1.72172 1.22674 0.98293 0.89605 0.96856 1.61841 1.57731 1.03810 1.07708 0.93254 0.91375 0.91760 0.88165 0.89366 0.94054 0.93136 0.92794 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.13 12.88 21.45 0.28 -51.85 15 2 C 0.03 1.52 5.39 84.66 0.46 1.97 15 3 Si 0.95 42.77 29.54 68.60 2.03 44.80 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 7 C -0.56 -30.24 8.37 25.60 0.21 -30.03 15 8 H 0.06 3.00 7.77 -2.91 -0.02 2.98 15 9 C 0.21 10.35 3.23 44.64 0.14 10.49 15 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 11 C -0.12 -4.70 5.90 31.98 0.19 -4.51 15 12 C -0.09 -2.83 2.98 -9.61 -0.03 -2.86 15 13 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 14 C -0.04 -1.01 5.67 71.98 0.41 -0.60 15 15 S -0.27 -6.88 25.42 -56.49 -1.44 -8.32 15 16 C 0.06 2.12 6.68 86.65 0.58 2.70 15 17 N -0.68 -32.85 6.77 -486.27 -3.29 -36.15 15 18 H 0.26 14.47 8.31 -92.70 -0.77 13.70 15 19 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.06 2.38 7.96 -2.39 -0.02 2.36 15 21 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.09 2.14 8.06 -2.39 -0.02 2.12 15 23 H 0.10 2.04 9.07 73.35 0.67 2.71 15 24 H 0.05 1.76 7.77 -2.39 -0.02 1.74 15 25 H 0.05 2.09 8.14 -2.38 -0.02 2.07 15 26 H 0.33 16.25 8.35 -89.69 -0.75 15.50 15 Total: -1.00 -58.84 232.15 0.63 -58.21 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.09 Total: 16.14 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 1.96 Total: -22.84 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -3.02 Total: -88.00 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.44 Total: -8.32 kcal Total: -58.84 0.63 -58.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238724169.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.770 kcal (2) G-P(sol) polarization free energy of solvation -58.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds