Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48504 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47300 * 300.00213 * 3 2 1 6 6 H 1.48501 * 109.47206 * 60.00576 * 3 2 1 7 7 C 1.37877 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.38835 * 59.80061 * 9 7 2 11 11 C 1.53096 * 109.38991 * 300.00052 * 9 7 2 12 12 S 1.81745 * 108.84173 * 176.92757 * 11 9 7 13 13 C 1.81750 * 102.22289 * 53.26460 * 12 11 9 14 14 C 1.53104 * 108.83896 * 306.73493 * 13 12 11 15 15 C 1.52579 * 109.30961 * 179.55419 * 9 7 2 16 16 H 1.09003 * 109.22921 * 311.09661 * 15 9 7 17 17 N 1.46904 * 109.22794 * 70.45281 * 15 9 7 18 18 H 0.97001 * 119.99438 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.57819 * 57.11553 * 11 9 7 20 20 H 1.09008 * 109.57483 * 296.73338 * 11 9 7 21 21 H 1.08998 * 109.57664 * 66.54305 * 13 12 11 22 22 H 1.08994 * 109.57594 * 186.93170 * 13 12 11 23 23 H 1.09002 * 109.38783 * 183.17334 * 14 13 12 24 24 H 1.08992 * 109.38841 * 302.87501 * 14 13 12 25 25 H 1.00895 * 111.00320 * 180.02562 * 17 15 9 26 26 H 1.00906 * 110.99661 * 303.95515 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6225 -2.5533 -0.8906 11 6 0.3710 -2.5791 1.2485 12 16 -0.5985 -4.1151 1.1867 13 6 0.6889 -5.3727 0.9333 14 6 1.5331 -4.9783 -0.2816 15 6 2.2457 -3.6560 -0.0133 16 1 2.9878 -3.4837 -0.7929 17 7 2.9213 -3.7263 1.2893 18 1 -0.4849 0.8401 0.0004 19 1 -0.3027 -1.7228 1.2763 20 1 1.0003 -2.5800 2.1386 21 1 1.3243 -5.4282 1.8171 22 1 0.2227 -6.3417 0.7549 23 1 2.2726 -5.7551 -0.4759 24 1 0.8862 -4.8706 -1.1521 25 1 3.5871 -4.4840 1.3109 26 1 3.3654 -2.8485 1.5140 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258488496.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = -15.107108 kcal Electronic energy + Delta-G solvation = -10163.696157 eV Core-core repulsion = 8367.693012 eV Total energy + Delta-G solvation = -1796.003145 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.16675 -33.07072 -30.46202 -29.56169 -25.51187 -24.83610 -21.51478 -18.70340 -16.49716 -15.56949 -15.10738 -14.64832 -14.39865 -13.10539 -12.89110 -12.55750 -12.16165 -11.75783 -11.18141 -10.99187 -10.76883 -10.61982 -10.41181 -10.17807 -9.76251 -9.04171 -8.47104 -8.41117 -7.93854 -6.64144 -6.08903 -4.18610 2.94195 3.23370 3.32201 3.34056 3.80437 4.35056 5.16322 5.32979 5.55074 5.68896 5.83029 6.21156 6.27715 6.40604 6.53558 6.74886 6.95158 7.07310 7.51106 7.70561 7.86394 8.00247 8.20418 8.28621 8.83015 9.46721 10.95172 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.057693 B = 0.014469 C = 0.012536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.207982 B = 1934.715308 C = 2232.961127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.054 3.946 10 H 0.039 0.961 11 C -0.030 4.030 12 S -0.344 6.344 13 C -0.058 4.058 14 C -0.114 4.114 15 C 0.089 3.911 16 H 0.027 0.973 17 N -0.840 5.840 18 H 0.263 0.737 19 H 0.122 0.878 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.318 0.682 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -6.137 0.950 7.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.057 0.943 11 C -0.177 4.177 12 S -0.117 6.117 13 C -0.206 4.206 14 C -0.153 4.153 15 C -0.022 4.022 16 H 0.045 0.955 17 N -0.370 5.370 18 H 0.073 0.927 19 H 0.140 0.860 20 H 0.087 0.913 21 H 0.105 0.895 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.663 -6.298 1.356 6.654 hybrid contribution 2.601 1.279 -0.669 2.974 sum 4.264 -5.019 0.687 6.621 Atomic orbital electron populations 1.69852 1.05884 1.26698 1.49740 1.25002 0.94892 0.99263 0.94763 0.86504 0.79945 0.83661 0.77686 1.19893 1.20973 1.20907 1.21129 0.92602 0.90270 1.51371 0.92671 1.18863 0.92287 0.91385 0.94067 0.94293 1.23713 0.99982 0.91799 1.02231 1.86371 1.20486 1.08570 1.96311 1.23033 0.98374 0.97825 1.01407 1.21771 0.98559 0.97252 0.97710 1.21412 0.96366 0.95232 0.89159 0.95494 1.58863 1.36309 1.09333 1.32477 0.92697 0.86049 0.91319 0.89540 0.90537 0.93101 0.91191 0.87118 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 11.30 55.43 0.63 -24.07 15 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -13.36 7.86 -34.44 -0.27 -13.63 15 8 H 0.06 1.40 7.46 -52.48 -0.39 1.01 15 9 C 0.05 1.32 1.78 -91.94 -0.16 1.15 15 10 H 0.04 1.06 8.06 -51.93 -0.42 0.64 15 11 C -0.03 -0.72 5.33 37.21 0.20 -0.52 15 12 S -0.34 -7.49 22.33 -107.50 -2.40 -9.89 15 13 C -0.06 -1.04 6.25 37.21 0.23 -0.81 15 14 C -0.11 -2.02 5.49 -26.89 -0.15 -2.16 15 15 C 0.09 1.79 2.86 -68.14 -0.19 1.60 15 16 H 0.03 0.55 8.08 -51.93 -0.42 0.13 15 17 N -0.84 -15.00 6.75 -5.03 -0.03 -15.04 15 18 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 19 H 0.12 3.31 6.00 -51.93 -0.31 3.00 15 20 H 0.07 1.66 7.26 -51.92 -0.38 1.29 15 21 H 0.09 1.54 7.26 -51.93 -0.38 1.16 15 22 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.07 1.30 8.06 -51.93 -0.42 0.88 15 25 H 0.32 4.76 9.02 -39.29 -0.35 4.40 15 26 H 0.35 6.47 8.07 -39.29 -0.32 6.16 15 LS Contribution 219.97 15.07 3.31 3.31 Total: -1.00 -27.15 219.97 -7.32 -34.47 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.37 Total: 8.41 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.44 Total: -12.78 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.59 Total: -39.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -2.40 Total: -9.89 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.15 -7.32 -34.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258488496.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.365 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds