Wall clock time and date at job start Mon Mar 30 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48504 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47300 * 300.00213 * 3 2 1 6 6 H 1.48501 * 109.47206 * 60.00576 * 3 2 1 7 7 C 1.37877 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00160 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.38835 * 59.80061 * 9 7 2 11 11 C 1.53096 * 109.38991 * 300.00052 * 9 7 2 12 12 S 1.81745 * 108.84173 * 176.92757 * 11 9 7 13 13 C 1.81750 * 102.22289 * 53.26460 * 12 11 9 14 14 C 1.53104 * 108.83896 * 306.73493 * 13 12 11 15 15 C 1.52579 * 109.30961 * 179.55419 * 9 7 2 16 16 H 1.09003 * 109.22921 * 311.09661 * 15 9 7 17 17 N 1.46904 * 109.22794 * 70.45281 * 15 9 7 18 18 H 0.97001 * 119.99438 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.57819 * 57.11553 * 11 9 7 20 20 H 1.09008 * 109.57483 * 296.73338 * 11 9 7 21 21 H 1.08998 * 109.57664 * 66.54305 * 13 12 11 22 22 H 1.08994 * 109.57594 * 186.93170 * 13 12 11 23 23 H 1.09002 * 109.38783 * 183.17334 * 14 13 12 24 24 H 1.08992 * 109.38841 * 302.87501 * 14 13 12 25 25 H 1.00895 * 111.00320 * 180.02562 * 17 15 9 26 26 H 1.00906 * 110.99661 * 303.95515 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6225 -2.5533 -0.8906 11 6 0.3710 -2.5791 1.2485 12 16 -0.5985 -4.1151 1.1867 13 6 0.6889 -5.3727 0.9333 14 6 1.5331 -4.9783 -0.2816 15 6 2.2457 -3.6560 -0.0133 16 1 2.9878 -3.4837 -0.7929 17 7 2.9213 -3.7263 1.2893 18 1 -0.4849 0.8401 0.0004 19 1 -0.3027 -1.7228 1.2763 20 1 1.0003 -2.5800 2.1386 21 1 1.3243 -5.4282 1.8171 22 1 0.2227 -6.3417 0.7549 23 1 2.2726 -5.7551 -0.4759 24 1 0.8862 -4.8706 -1.1521 25 1 3.5871 -4.4840 1.3109 26 1 3.3654 -2.8485 1.5140 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258488496.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:08 Heat of formation + Delta-G solvation = -32.809671 kcal Electronic energy + Delta-G solvation = -10164.463798 eV Core-core repulsion = 8367.693012 eV Total energy + Delta-G solvation = -1796.770786 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.82847 -34.98368 -32.00459 -31.36756 -27.42549 -26.53693 -23.24114 -20.39446 -18.47480 -17.26813 -16.78645 -16.31512 -16.15218 -14.72059 -14.46174 -14.39800 -13.87077 -13.48084 -12.99185 -12.66515 -12.56068 -12.33712 -12.15048 -12.02768 -11.64344 -10.79608 -10.49686 -10.21088 -9.42279 -8.39442 -8.10696 -6.28022 1.29304 1.41186 1.43368 1.53199 2.03643 2.41901 3.16141 3.81857 4.09879 4.20668 4.37338 4.66507 4.78351 4.81116 4.89863 5.09730 5.19473 5.32646 5.49223 5.79798 5.88350 6.23993 6.43823 6.81374 6.87381 7.41018 8.91780 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.057693 B = 0.014469 C = 0.012536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.207982 B = 1934.715308 C = 2232.961127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.054 3.946 10 H -0.001 1.001 11 C -0.019 4.019 12 S -0.369 6.369 13 C -0.044 4.044 14 C -0.110 4.110 15 C 0.095 3.905 16 H 0.024 0.976 17 N -0.836 5.836 18 H 0.261 0.739 19 H 0.084 0.916 20 H 0.064 0.936 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.341 0.659 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -7.356 1.143 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.034 3.966 10 H 0.017 0.983 11 C -0.167 4.167 12 S -0.143 6.143 13 C -0.192 4.192 14 C -0.149 4.149 15 C -0.017 4.017 16 H 0.042 0.958 17 N -0.368 5.368 18 H 0.071 0.929 19 H 0.103 0.897 20 H 0.083 0.917 21 H 0.113 0.887 22 H 0.125 0.875 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.154 0.846 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.176 -7.542 1.551 8.329 hybrid contribution 2.131 1.581 -0.737 2.754 sum 5.307 -5.960 0.814 8.022 Atomic orbital electron populations 1.70010 1.07381 1.27263 1.50892 1.25794 0.95585 1.02656 0.94646 0.85495 0.79134 0.79587 0.77337 1.18771 1.21087 1.20866 1.21473 0.92951 0.91259 1.50579 0.92198 1.18759 0.92670 0.92934 0.92249 0.98331 1.23321 0.99304 0.92198 1.01903 1.86387 1.22594 1.08813 1.96460 1.23157 0.97067 0.97078 1.01859 1.21725 0.99101 0.96969 0.97086 1.21205 0.95515 0.94825 0.90118 0.95836 1.58754 1.37094 1.09985 1.30936 0.92924 0.89736 0.91715 0.88662 0.87536 0.89025 0.92296 0.84642 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.68 11.30 21.45 0.24 -52.44 15 2 C 0.01 0.67 5.30 84.65 0.45 1.12 15 3 Si 0.96 42.50 29.54 68.60 2.03 44.53 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 7 C -0.52 -27.31 7.86 25.60 0.20 -27.11 15 8 H 0.06 3.00 7.46 -2.91 -0.02 2.98 15 9 C 0.05 2.66 1.78 -11.65 -0.02 2.64 15 10 H 0.00 -0.08 8.06 -2.39 -0.02 -0.10 15 11 C -0.02 -0.94 5.33 72.01 0.38 -0.56 15 12 S -0.37 -15.84 22.33 -56.49 -1.26 -17.10 15 13 C -0.04 -1.43 6.25 72.02 0.45 -0.98 15 14 C -0.11 -3.56 5.49 30.49 0.17 -3.39 15 15 C 0.09 3.64 2.86 44.64 0.13 3.76 15 16 H 0.02 0.92 8.08 -2.39 -0.02 0.90 15 17 N -0.84 -27.81 6.75 -169.83 -1.15 -28.95 15 18 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 19 H 0.08 4.80 6.00 -2.39 -0.01 4.78 15 20 H 0.06 3.15 7.26 -2.38 -0.02 3.13 15 21 H 0.09 3.01 7.26 -2.39 -0.02 3.00 15 22 H 0.11 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.06 2.06 8.06 -2.39 -0.02 2.04 15 25 H 0.34 8.90 9.02 -89.70 -0.81 8.10 15 26 H 0.34 12.16 8.07 -89.69 -0.72 11.43 15 Total: -1.00 -58.72 219.97 1.27 -57.45 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.35 Total: 21.02 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 1.76 Total: -24.51 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -0.90 Total: -81.39 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -15.84 SS G_CDS: -1.26 Total: -17.10 kcal Total: -58.72 1.27 -57.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258488496.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.645 kcal (2) G-P(sol) polarization free energy of solvation -58.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds