Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47086 * 240.00298 * 3 2 1 5 5 H 1.48499 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46995 * 120.00553 * 3 2 1 7 7 C 1.37881 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99801 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.18421 * 300.61775 * 9 7 2 11 11 C 1.52583 * 109.22580 * 59.99791 * 9 7 2 12 12 C 1.53100 * 109.87443 * 190.94712 * 11 9 7 13 13 S 1.81753 * 108.83805 * 297.02480 * 12 11 9 14 14 C 1.81744 * 102.22231 * 53.26833 * 13 12 11 15 15 C 1.52405 * 109.07985 * 181.26161 * 9 7 2 16 16 H 1.08998 * 109.41829 * 289.07700 * 15 9 7 17 17 N 1.46906 * 109.34567 * 48.86967 * 15 9 7 18 18 H 0.97000 * 119.99575 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.39189 * 70.84726 * 11 9 7 20 20 H 1.08996 * 109.38904 * 311.04768 * 11 9 7 21 21 H 1.09001 * 109.57474 * 56.83317 * 12 11 9 22 22 H 1.09001 * 109.57398 * 177.08915 * 12 11 9 23 23 H 1.08995 * 109.57932 * 66.53556 * 14 13 12 24 24 H 1.09000 * 109.57433 * 186.79604 * 14 13 12 25 25 H 1.00902 * 110.99441 * 180.38752 * 17 15 9 26 26 H 1.00904 * 110.99671 * 304.33873 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6175 -2.5478 0.8839 11 6 0.3763 -2.5732 -1.2498 12 6 -0.5931 -3.7528 -1.1367 13 16 0.3654 -5.2952 -1.0622 14 6 1.5170 -4.9669 0.3050 15 6 2.2489 -3.6507 0.0296 16 1 2.7589 -3.7144 -0.9316 17 7 3.2361 -3.4104 1.0906 18 1 -0.4849 0.8401 0.0004 19 1 1.0087 -2.7074 -2.1274 20 1 -0.1902 -1.6475 -1.3501 21 1 -1.1899 -3.6494 -0.2304 22 1 -1.2499 -3.7703 -2.0064 23 1 0.9614 -4.8872 1.2393 24 1 2.2390 -5.7802 0.3776 25 1 3.9142 -4.1566 1.1292 26 1 3.6883 -2.5167 0.9681 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258498079.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -31.087637 kcal Electronic energy + Delta-G solvation = -10113.165810 eV Core-core repulsion = 8316.469697 eV Total energy + Delta-G solvation = -1796.696113 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.72168 -34.74613 -33.42181 -29.76244 -29.18192 -25.39041 -23.05366 -20.94082 -18.55814 -17.72415 -16.75571 -16.06816 -15.60418 -15.25437 -14.91872 -14.25150 -13.84210 -13.45538 -13.16644 -12.85058 -12.66681 -12.47248 -12.19306 -11.77864 -11.32346 -10.93465 -10.66230 -10.30912 -9.38607 -8.64644 -8.06458 -6.21265 0.94812 1.43924 1.44567 1.51277 1.61129 2.43696 3.17926 3.85612 4.04006 4.19764 4.23654 4.36772 4.54947 4.65108 4.87583 4.99089 5.19148 5.29024 5.57648 5.86848 5.98643 6.31380 6.45677 6.85276 6.88760 7.46030 8.95784 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.055835 B = 0.014154 C = 0.011845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.357155 B = 1977.738476 C = 2363.247568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.048 3.952 10 H -0.005 1.005 11 C -0.108 4.108 12 C -0.064 4.064 13 S -0.289 6.289 14 C -0.059 4.059 15 C 0.107 3.893 16 H 0.026 0.974 17 N -0.843 5.843 18 H 0.260 0.740 19 H 0.040 0.960 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.105 0.895 23 H 0.075 0.925 24 H 0.114 0.886 25 H 0.338 0.662 26 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -6.028 -1.218 6.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.029 3.971 10 H 0.013 0.987 11 C -0.148 4.148 12 C -0.212 4.212 13 S -0.064 6.064 14 C -0.208 4.208 15 C -0.006 4.006 16 H 0.044 0.956 17 N -0.377 5.377 18 H 0.069 0.931 19 H 0.059 0.941 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.123 0.877 23 H 0.094 0.906 24 H 0.132 0.868 25 H 0.151 0.849 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.013 -6.864 -1.346 7.279 hybrid contribution 0.926 2.134 0.046 2.327 sum 2.939 -4.730 -1.300 5.718 Atomic orbital electron populations 1.69971 1.07137 1.27135 1.51341 1.25694 0.95641 1.02261 0.95026 0.85688 0.78367 0.79320 0.78705 1.19750 1.21455 1.19726 1.21338 0.92972 0.91384 1.50017 0.92215 1.18546 0.92845 0.92655 0.93058 0.98673 1.21676 0.97259 0.97225 0.98597 1.23454 0.99284 0.93689 1.04800 1.86158 1.44755 1.26610 1.48871 1.23395 0.99251 1.00711 0.97455 1.21345 0.93752 0.93621 0.91851 0.95635 1.58681 1.20737 1.07885 1.50359 0.93082 0.94081 0.90200 0.91342 0.87657 0.90596 0.86751 0.84906 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.45 11.29 21.45 0.24 -51.21 15 2 C 0.01 0.66 5.25 84.66 0.44 1.10 15 3 Si 0.95 42.39 29.54 68.60 2.03 44.42 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.52 -27.08 7.84 25.60 0.20 -26.88 15 8 H 0.06 2.98 6.11 -2.91 -0.02 2.96 15 9 C 0.05 2.32 1.64 -11.87 -0.02 2.30 15 10 H 0.00 -0.27 8.08 -2.39 -0.02 -0.29 15 11 C -0.11 -4.97 4.93 30.49 0.15 -4.82 15 12 C -0.06 -2.51 6.45 72.02 0.46 -2.05 15 13 S -0.29 -10.30 22.33 -56.49 -1.26 -11.56 15 14 C -0.06 -2.08 6.02 72.02 0.43 -1.65 15 15 C 0.11 4.28 2.71 44.75 0.12 4.40 15 16 H 0.03 1.05 8.06 -2.39 -0.02 1.03 15 17 N -0.84 -30.74 9.14 -169.35 -1.55 -32.29 15 18 H 0.26 14.04 8.31 -92.71 -0.77 13.27 15 19 H 0.04 1.87 8.06 -2.39 -0.02 1.85 15 20 H 0.08 4.18 5.81 -2.39 -0.01 4.16 15 21 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.11 3.66 8.14 -2.39 -0.02 3.64 15 23 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.11 3.35 8.14 -2.39 -0.02 3.33 15 25 H 0.34 9.81 9.04 -89.69 -0.81 9.00 15 26 H 0.35 13.39 6.60 -89.69 -0.59 12.80 15 Total: -1.00 -56.28 221.09 1.04 -55.25 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.22 Total: 22.99 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 1.80 Total: -27.60 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.31 Total: -83.50 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -1.26 Total: -11.56 kcal Total: -56.28 1.04 -55.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498079.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.158 kcal (2) G-P(sol) polarization free energy of solvation -56.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds