Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47235 * 270.00277 * 3 2 1 5 5 H 1.48495 * 109.46956 * 30.00316 * 3 2 1 6 6 H 1.48502 * 109.46715 * 150.00210 * 3 2 1 7 7 C 1.37881 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99801 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.18421 * 300.61775 * 9 7 2 11 11 C 1.52583 * 109.22580 * 59.99791 * 9 7 2 12 12 C 1.53100 * 109.87443 * 190.94712 * 11 9 7 13 13 S 1.81753 * 108.83805 * 297.02480 * 12 11 9 14 14 C 1.81744 * 102.22231 * 53.26833 * 13 12 11 15 15 C 1.52405 * 109.07985 * 181.26161 * 9 7 2 16 16 H 1.09001 * 109.34727 * 48.86587 * 15 9 7 17 17 N 1.46902 * 109.42106 * 289.07689 * 15 9 7 18 18 H 0.97000 * 119.99575 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.39189 * 70.84726 * 11 9 7 20 20 H 1.08996 * 109.38904 * 311.04768 * 11 9 7 21 21 H 1.09001 * 109.57474 * 56.83317 * 12 11 9 22 22 H 1.09001 * 109.57398 * 177.08915 * 12 11 9 23 23 H 1.08995 * 109.57932 * 66.53556 * 14 13 12 24 24 H 1.08999 * 109.57208 * 186.92840 * 14 13 12 25 25 H 1.00899 * 111.00096 * 179.56625 * 17 15 9 26 26 H 1.00902 * 110.99869 * 303.52669 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6175 -2.5478 0.8839 11 6 0.3763 -2.5732 -1.2498 12 6 -0.5931 -3.7528 -1.1367 13 16 0.3654 -5.2952 -1.0622 14 6 1.5170 -4.9669 0.3050 15 6 2.2489 -3.6507 0.0296 16 1 2.9814 -3.4724 0.8168 17 7 2.9363 -3.7367 -1.2658 18 1 -0.4849 0.8401 0.0004 19 1 1.0087 -2.7074 -2.1274 20 1 -0.1902 -1.6475 -1.3501 21 1 -1.1899 -3.6494 -0.2304 22 1 -1.2499 -3.7703 -2.0064 23 1 0.9614 -4.8872 1.2393 24 1 2.2404 -5.7791 0.3761 25 1 3.6091 -4.4886 -1.2689 26 1 2.2744 -3.8405 -2.0202 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258498102.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = -10.791199 kcal Electronic energy + Delta-G solvation = -10188.935536 eV Core-core repulsion = 8393.119543 eV Total energy + Delta-G solvation = -1795.815993 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.20818 -32.82635 -31.19121 -28.23487 -27.38718 -23.34365 -21.87581 -18.70663 -16.66833 -16.19522 -14.81584 -14.39551 -13.93334 -13.54073 -13.19439 -12.31883 -12.23826 -11.84468 -11.60805 -11.41517 -10.88485 -10.56918 -10.07140 -9.77926 -9.35873 -9.09520 -8.84454 -8.30364 -7.83155 -7.19487 -5.97153 -4.01302 2.38922 3.11474 3.33627 3.39987 3.44116 4.46463 5.27942 5.39781 5.53545 5.74764 5.81123 5.98729 6.04747 6.30977 6.40400 6.65995 6.96428 7.26163 7.60473 7.86933 8.01268 8.13475 8.30482 8.46437 9.02619 9.62118 11.08070 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.064946 B = 0.013667 C = 0.012225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.022354 B = 2048.275941 C = 2289.881931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.062 0.938 9 C 0.049 3.951 10 H 0.026 0.974 11 C -0.118 4.118 12 C -0.066 4.066 13 S -0.317 6.317 14 C -0.110 4.110 15 C 0.098 3.902 16 H 0.078 0.922 17 N -0.826 5.826 18 H 0.259 0.741 19 H 0.052 0.948 20 H 0.109 0.891 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.318 0.682 26 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -6.604 -0.942 6.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.080 0.920 9 C 0.030 3.970 10 H 0.044 0.956 11 C -0.157 4.157 12 C -0.214 4.214 13 S -0.092 6.092 14 C -0.260 4.260 15 C -0.015 4.015 16 H 0.096 0.904 17 N -0.356 5.356 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.127 0.873 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.873 -6.653 -1.418 6.858 hybrid contribution -0.005 0.900 0.732 1.160 sum 0.869 -5.753 -0.686 5.858 Atomic orbital electron populations 1.69841 1.05863 1.26340 1.51776 1.24992 0.94880 0.99160 0.95594 0.86556 0.79778 0.83399 0.78019 1.20803 1.21532 1.20012 1.21128 0.93238 0.89598 1.48528 0.92002 1.18615 0.92046 0.92250 0.94073 0.95559 1.21878 0.96944 0.96868 1.00027 1.23646 0.99658 0.93901 1.04192 1.86261 1.45416 1.28910 1.48570 1.24533 0.99461 1.03625 0.98411 1.21670 0.96090 0.91823 0.91962 0.90380 1.59020 1.20756 1.50924 1.04902 0.93126 0.92914 0.87318 0.90672 0.89643 0.90318 0.89647 0.87160 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 11.29 55.43 0.63 -24.44 15 2 C 0.05 1.45 5.25 -17.82 -0.09 1.36 15 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.49 -13.08 8.34 -34.44 -0.29 -13.36 15 8 H 0.06 1.70 7.73 -52.49 -0.41 1.29 15 9 C 0.05 1.17 1.66 -92.29 -0.15 1.01 15 10 H 0.03 0.69 8.08 -51.93 -0.42 0.27 15 11 C -0.12 -2.66 4.75 -26.89 -0.13 -2.79 15 12 C -0.07 -1.28 6.45 37.21 0.24 -1.04 15 13 S -0.32 -5.69 21.05 -107.50 -2.26 -7.95 15 14 C -0.11 -1.92 6.14 37.21 0.23 -1.69 15 15 C 0.10 1.97 2.95 -67.96 -0.20 1.77 15 16 H 0.08 1.60 8.08 -51.93 -0.42 1.18 15 17 N -0.83 -15.71 8.83 -4.88 -0.04 -15.75 15 18 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 19 H 0.05 1.19 6.01 -51.93 -0.31 0.88 15 20 H 0.11 2.79 5.81 -51.93 -0.30 2.49 15 21 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.09 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.32 5.17 9.04 -39.29 -0.36 4.81 15 26 H 0.34 6.65 5.43 -39.29 -0.21 6.43 15 LS Contribution 218.62 15.07 3.29 3.29 Total: -1.00 -27.16 218.62 -7.05 -34.21 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.25 Total: 9.02 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.39 Total: -14.74 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.58 Total: -40.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -2.26 Total: -7.95 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.16 -7.05 -34.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498102.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.419 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds