Wall clock time and date at job start Mon Mar 30 2020 02:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 119.99985 * 2 1 4 4 H 1.48504 * 109.47154 * 269.99723 * 3 2 1 5 5 H 1.48501 * 109.47415 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47276 * 149.99797 * 3 2 1 7 7 C 1.37883 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.22454 * 60.59349 * 9 7 2 11 11 C 1.52586 * 109.19292 * 301.21534 * 9 7 2 12 12 C 1.53100 * 109.95592 * 169.02457 * 11 9 7 13 13 S 1.81752 * 108.83928 * 63.02508 * 12 11 9 14 14 C 1.81751 * 102.22077 * 306.73119 * 13 12 11 15 15 C 1.52581 * 109.22755 * 179.97438 * 9 7 2 16 16 H 1.09002 * 109.38899 * 311.10356 * 15 9 7 17 17 N 1.46902 * 109.38771 * 70.90278 * 15 9 7 18 18 H 0.96995 * 120.00035 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.39112 * 289.17440 * 11 9 7 20 20 H 1.09001 * 109.38796 * 48.87599 * 11 9 7 21 21 H 1.09000 * 109.57232 * 182.82935 * 12 11 9 22 22 H 1.08993 * 109.57750 * 303.21764 * 12 11 9 23 23 H 1.08993 * 109.57574 * 293.46229 * 14 13 12 24 24 H 1.09001 * 109.57345 * 173.07091 * 14 13 12 25 25 H 1.00904 * 111.00136 * 180.19697 * 17 15 9 26 26 H 1.00899 * 111.00156 * 304.15455 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6343 -2.5575 -0.8963 11 6 0.3530 -2.5599 1.2326 12 6 -0.6160 -3.7395 1.1154 13 16 0.3415 -5.2839 1.0769 14 6 1.5189 -4.9731 -0.2724 15 6 2.2475 -3.6547 0.0005 16 1 2.9957 -3.4873 -0.7742 17 7 2.9093 -3.7279 1.3100 18 1 -0.4850 0.8400 -0.0004 19 1 0.9686 -2.6845 2.1234 20 1 -0.2140 -1.6324 1.3132 21 1 -1.2874 -3.7473 1.9740 22 1 -1.1955 -3.6461 0.1970 23 1 0.9809 -4.9038 -1.2177 24 1 2.2423 -5.7870 -0.3204 25 1 3.5773 -4.4837 1.3358 26 1 3.3477 -2.8496 1.5432 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258498144.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:59 Heat of formation + Delta-G solvation = -12.169445 kcal Electronic energy + Delta-G solvation = -10176.992758 eV Core-core repulsion = 8381.117000 eV Total energy + Delta-G solvation = -1795.875758 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.97240 -32.82311 -31.18032 -28.28513 -27.37116 -23.36592 -21.54191 -18.69821 -16.50914 -16.01838 -14.98196 -14.41599 -13.79516 -13.46324 -13.06795 -12.34071 -11.92593 -11.72218 -11.52495 -11.33564 -10.90818 -10.61582 -10.03162 -9.79627 -9.46528 -8.95846 -8.82270 -8.32688 -7.68171 -6.74051 -6.03857 -4.13923 2.69104 3.25138 3.32746 3.34748 3.40549 4.36531 5.19402 5.40764 5.68409 5.72289 5.99579 6.19245 6.23044 6.35559 6.55481 6.72279 7.21449 7.37307 7.64495 7.88189 7.99854 8.10279 8.37074 8.38515 8.87631 9.50826 10.98550 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.064409 B = 0.013713 C = 0.012223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.618369 B = 2041.357531 C = 2290.181593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.049 3.951 10 H 0.023 0.977 11 C -0.108 4.108 12 C -0.064 4.064 13 S -0.287 6.287 14 C -0.068 4.068 15 C 0.096 3.904 16 H 0.029 0.971 17 N -0.825 5.825 18 H 0.261 0.739 19 H 0.063 0.937 20 H 0.100 0.900 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.318 0.682 26 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -5.390 0.502 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.030 3.970 10 H 0.042 0.958 11 C -0.147 4.147 12 C -0.212 4.212 13 S -0.062 6.062 14 C -0.217 4.217 15 C -0.017 4.017 16 H 0.047 0.953 17 N -0.355 5.355 18 H 0.071 0.929 19 H 0.082 0.918 20 H 0.118 0.882 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.128 0.872 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.095 -6.306 1.422 6.557 hybrid contribution 1.446 2.160 -1.397 2.951 sum 2.541 -4.147 0.024 4.863 Atomic orbital electron populations 1.69844 1.05867 1.26492 1.50319 1.24953 0.94869 0.99083 0.95025 0.86596 0.79856 0.83533 0.78005 1.20825 1.21178 1.19972 1.21086 0.92539 0.90503 1.50827 0.92975 1.18643 0.92460 0.91192 0.94708 0.95850 1.21705 0.96744 0.96160 1.00104 1.23516 0.99376 0.94979 1.03344 1.85967 1.42270 1.26971 1.51011 1.23488 0.99128 1.00922 0.98185 1.21461 0.96503 0.94103 0.89641 0.95323 1.58779 1.36755 1.08993 1.30928 0.92899 0.91844 0.88203 0.90133 0.91472 0.90694 0.90024 0.87169 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.19 55.43 0.62 -23.94 15 2 C 0.06 1.66 5.25 -17.82 -0.09 1.57 15 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.51 -13.38 7.87 -34.44 -0.27 -13.65 15 8 H 0.05 1.34 7.50 -52.49 -0.39 0.95 15 9 C 0.05 1.17 1.69 -92.20 -0.16 1.02 15 10 H 0.02 0.62 8.08 -51.93 -0.42 0.21 15 11 C -0.11 -2.54 4.81 -26.89 -0.13 -2.67 15 12 C -0.06 -1.33 6.46 37.21 0.24 -1.09 15 13 S -0.29 -5.58 21.79 -107.50 -2.34 -7.92 15 14 C -0.07 -1.26 6.14 37.20 0.23 -1.03 15 15 C 0.10 1.94 2.91 -67.88 -0.20 1.74 15 16 H 0.03 0.59 8.09 -51.93 -0.42 0.17 15 17 N -0.82 -15.44 7.33 -4.81 -0.04 -15.47 15 18 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 19 H 0.06 1.53 7.05 -51.93 -0.37 1.16 15 20 H 0.10 2.63 5.70 -51.93 -0.30 2.34 15 21 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 22 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.32 5.11 9.03 -39.29 -0.35 4.76 15 26 H 0.35 6.69 8.12 -39.29 -0.32 6.37 15 LS Contribution 220.72 15.07 3.33 3.33 Total: -1.00 -27.01 220.72 -7.23 -34.24 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.39 Total: 8.18 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.38 Total: -14.11 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.58 Total: -39.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.34 Total: -7.92 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -27.01 -7.23 -34.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498144.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.067 kcal (2) G-P(sol) polarization free energy of solvation -27.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds