Wall clock time and date at job start Mon Mar 30 2020 02:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 119.99985 * 2 1 4 4 H 1.48504 * 109.47154 * 269.99723 * 3 2 1 5 5 H 1.48501 * 109.47415 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47276 * 149.99797 * 3 2 1 7 7 C 1.37883 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.22454 * 60.59349 * 9 7 2 11 11 C 1.52586 * 109.19292 * 301.21534 * 9 7 2 12 12 C 1.53100 * 109.95592 * 169.02457 * 11 9 7 13 13 S 1.81752 * 108.83928 * 63.02508 * 12 11 9 14 14 C 1.81751 * 102.22077 * 306.73119 * 13 12 11 15 15 C 1.52581 * 109.22755 * 179.97438 * 9 7 2 16 16 H 1.09002 * 109.38899 * 311.10356 * 15 9 7 17 17 N 1.46902 * 109.38771 * 70.90278 * 15 9 7 18 18 H 0.96995 * 120.00035 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.39112 * 289.17440 * 11 9 7 20 20 H 1.09001 * 109.38796 * 48.87599 * 11 9 7 21 21 H 1.09000 * 109.57232 * 182.82935 * 12 11 9 22 22 H 1.08993 * 109.57750 * 303.21764 * 12 11 9 23 23 H 1.08993 * 109.57574 * 293.46229 * 14 13 12 24 24 H 1.09001 * 109.57345 * 173.07091 * 14 13 12 25 25 H 1.00904 * 111.00136 * 180.19697 * 17 15 9 26 26 H 1.00899 * 111.00156 * 304.15455 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6343 -2.5575 -0.8963 11 6 0.3530 -2.5599 1.2326 12 6 -0.6160 -3.7395 1.1154 13 16 0.3415 -5.2839 1.0769 14 6 1.5189 -4.9731 -0.2724 15 6 2.2475 -3.6547 0.0005 16 1 2.9957 -3.4873 -0.7742 17 7 2.9093 -3.7279 1.3100 18 1 -0.4850 0.8400 -0.0004 19 1 0.9686 -2.6845 2.1234 20 1 -0.2140 -1.6324 1.3132 21 1 -1.2874 -3.7473 1.9740 22 1 -1.1955 -3.6461 0.1970 23 1 0.9809 -4.9038 -1.2177 24 1 2.2423 -5.7870 -0.3204 25 1 3.5773 -4.4837 1.3358 26 1 3.3477 -2.8496 1.5432 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258498144.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:59 Heat of formation + Delta-G solvation = -29.450918 kcal Electronic energy + Delta-G solvation = -10177.742139 eV Core-core repulsion = 8381.117000 eV Total energy + Delta-G solvation = -1796.625139 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.71952 -34.71183 -32.98445 -29.81320 -29.25834 -25.28351 -23.26570 -20.46986 -18.47191 -17.70087 -16.69245 -16.20123 -15.39549 -15.20016 -14.73881 -14.03802 -13.65479 -13.42924 -13.38153 -13.04688 -12.71337 -12.41581 -11.94020 -11.67372 -11.21102 -10.83981 -10.63181 -10.27153 -9.23101 -8.32873 -8.03722 -6.23184 1.13298 1.40953 1.43187 1.51759 1.80504 2.42383 3.17034 3.87633 4.12924 4.23019 4.30072 4.45659 4.71325 4.75837 4.82795 4.99658 5.26974 5.49576 5.61739 5.95808 6.06562 6.36743 6.51553 6.86155 6.92664 7.44747 8.94427 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.064409 B = 0.013713 C = 0.012223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.618369 B = 2041.357531 C = 2290.181593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.047 3.953 10 H -0.010 1.010 11 C -0.097 4.097 12 C -0.066 4.066 13 S -0.269 6.269 14 C -0.067 4.067 15 C 0.102 3.898 16 H 0.029 0.971 17 N -0.824 5.824 18 H 0.260 0.740 19 H 0.057 0.943 20 H 0.068 0.932 21 H 0.094 0.906 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.337 0.663 26 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -6.142 0.706 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.008 0.992 11 C -0.136 4.136 12 C -0.214 4.214 13 S -0.044 6.044 14 C -0.216 4.216 15 C -0.011 4.011 16 H 0.046 0.954 17 N -0.355 5.355 18 H 0.069 0.931 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.131 0.869 25 H 0.150 0.850 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.127 -7.080 1.628 7.570 hybrid contribution 1.140 2.358 -1.469 3.003 sum 3.267 -4.722 0.159 5.744 Atomic orbital electron populations 1.69987 1.07142 1.27034 1.51172 1.25699 0.95618 1.02278 0.94959 0.85628 0.78823 0.79681 0.77908 1.20617 1.21260 1.19141 1.21425 0.92806 0.91628 1.50293 0.92786 1.18589 0.92905 0.92300 0.93344 0.99184 1.21469 0.96693 0.96009 0.99468 1.23395 0.99257 0.95074 1.03709 1.85895 1.42176 1.24999 1.51295 1.23540 0.99400 1.00783 0.97898 1.21252 0.95784 0.93627 0.90455 0.95366 1.58699 1.37488 1.09555 1.29787 0.93088 0.92475 0.91391 0.88757 0.92146 0.90505 0.86936 0.85020 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 11.19 21.45 0.24 -51.25 15 2 C 0.01 0.71 5.25 84.66 0.44 1.15 15 3 Si 0.95 42.50 29.54 68.60 2.03 44.52 15 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 7 C -0.52 -27.38 7.87 25.60 0.20 -27.18 15 8 H 0.05 2.74 7.50 -2.91 -0.02 2.72 15 9 C 0.05 2.29 1.69 -11.82 -0.02 2.27 15 10 H -0.01 -0.54 8.08 -2.38 -0.02 -0.56 15 11 C -0.10 -4.58 4.81 30.49 0.15 -4.44 15 12 C -0.07 -2.70 6.46 72.02 0.46 -2.23 15 13 S -0.27 -9.83 21.79 -56.49 -1.23 -11.06 15 14 C -0.07 -2.31 6.14 72.01 0.44 -1.87 15 15 C 0.10 3.97 2.91 44.81 0.13 4.10 15 16 H 0.03 1.12 8.09 -2.39 -0.02 1.10 15 17 N -0.82 -29.13 7.33 -169.13 -1.24 -30.37 15 18 H 0.26 14.04 8.31 -92.71 -0.77 13.27 15 19 H 0.06 2.73 7.05 -2.39 -0.02 2.71 15 20 H 0.07 3.66 5.70 -2.39 -0.01 3.65 15 21 H 0.09 3.54 8.14 -2.39 -0.02 3.52 15 22 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 25 H 0.34 9.82 9.03 -89.69 -0.81 9.01 15 26 H 0.34 12.69 8.12 -89.69 -0.73 11.96 15 Total: -1.00 -56.34 220.72 1.25 -55.09 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.36 Total: 21.27 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 1.81 Total: -28.20 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.00 Total: -81.62 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -9.83 SS G_CDS: -1.23 Total: -11.06 kcal Total: -56.34 1.25 -55.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498144.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.642 kcal (2) G-P(sol) polarization free energy of solvation -56.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds