Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47183 * 270.00336 * 3 2 1 5 5 H 1.48495 * 109.47300 * 30.00202 * 3 2 1 6 6 H 1.48501 * 109.47022 * 150.00694 * 3 2 1 7 7 C 1.37873 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99846 * 359.97438 * 7 2 1 10 10 F 1.39906 * 109.47009 * 60.00502 * 9 7 2 11 11 F 1.39899 * 109.47512 * 300.00860 * 9 7 2 12 12 C 1.50705 * 109.47336 * 180.02562 * 9 7 2 13 13 C 1.34845 * 125.88846 * 89.99997 * 12 9 7 14 14 C 1.40883 * 107.41891 * 179.97438 * 13 12 9 15 15 C 1.34854 * 107.41814 * 0.02562 * 14 13 12 16 16 N 1.36343 * 108.21624 * 0.26031 * 15 14 13 17 17 H 0.96994 * 125.63652 * 179.73195 * 16 15 14 18 18 H 0.96995 * 120.00365 * 359.97438 * 1 2 3 19 19 H 1.08010 * 126.29114 * 0.02562 * 13 12 9 20 20 H 1.08008 * 126.29481 * 179.97438 * 14 13 12 21 21 H 1.08002 * 125.89007 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 9 0.4465 -2.5730 -1.1426 11 9 0.4471 -2.5735 1.1419 12 6 2.2305 -3.6446 -0.0005 13 6 2.7442 -4.2454 1.0919 14 6 3.6120 -5.2614 0.6456 15 6 3.5961 -5.2425 -0.7027 16 7 2.7546 -4.2480 -1.1051 17 1 2.5590 -4.0110 -2.0250 18 1 -0.4850 0.8400 0.0004 19 1 2.5291 -3.9944 2.1202 20 1 4.1855 -5.9318 1.2688 21 1 4.1571 -5.8985 -1.3518 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259027072.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -62.787211 kcal Electronic energy + Delta-G solvation = -11433.753944 eV Core-core repulsion = 8946.009753 eV Total energy + Delta-G solvation = -2487.744191 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 187.050 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -46.95585 -45.01547 -40.27352 -32.87748 -30.27448 -29.65471 -26.30554 -22.73433 -19.98387 -19.45363 -17.53807 -17.25212 -15.26166 -14.93923 -14.09973 -13.98649 -13.26514 -12.98460 -12.26988 -11.91177 -11.84815 -11.60640 -11.38617 -11.20253 -11.03597 -10.49739 -10.19574 -9.10906 -8.87655 -8.26590 -7.47718 -6.30581 -4.58808 2.86157 3.19118 3.24942 3.30090 3.61720 3.89439 4.21781 5.01011 5.29834 5.60677 6.03704 6.19569 6.46488 6.76190 6.82637 7.14625 7.43094 7.61804 7.66085 7.81296 8.17246 8.53025 9.22180 10.73417 Molecular weight = 187.05amu Principal moments of inertia in cm(-1) A = 0.054665 B = 0.014445 C = 0.013361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.083580 B = 1937.886978 C = 2095.084340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.466 3.534 10 F -0.224 7.224 11 F -0.209 7.209 12 C 0.006 3.994 13 C -0.186 4.186 14 C -0.206 4.206 15 C -0.029 4.029 16 N -0.544 5.544 17 H 0.414 0.586 18 H 0.271 0.729 19 H 0.135 0.865 20 H 0.131 0.869 21 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -5.378 -1.506 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.125 4.125 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.623 4.623 8 H 0.099 0.901 9 C 0.430 3.570 10 F -0.205 7.205 11 F -0.190 7.190 12 C -0.108 4.108 13 C -0.210 4.210 14 C -0.232 4.232 15 C -0.160 4.160 16 N -0.138 5.138 17 H 0.250 0.750 18 H 0.081 0.919 19 H 0.153 0.847 20 H 0.148 0.852 21 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.813 -5.237 -1.646 7.301 hybrid contribution 0.224 0.870 -0.395 0.981 sum 5.037 -4.367 -2.042 6.972 Atomic orbital electron populations 1.70042 1.06290 1.28028 1.44307 1.25157 0.94996 1.00216 0.92141 0.86242 0.79866 0.81407 0.78498 1.20072 1.20578 1.19172 1.21482 0.94102 0.88349 1.58322 0.90144 1.16498 0.78848 0.90764 0.70924 1.92876 1.77275 1.97394 1.52987 1.92900 1.76457 1.97274 1.52415 1.21440 1.03218 0.99135 0.87053 1.20592 1.02768 0.99762 0.97863 1.20803 1.05471 1.03135 0.93762 1.21705 1.01422 0.96796 0.96073 1.41781 1.36140 1.27497 1.08416 0.74972 0.91896 0.84731 0.85158 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.21 12.62 55.43 0.70 -24.51 14 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 14 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 14 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 14 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 7 C -0.59 -16.57 8.59 -34.44 -0.30 -16.86 14 8 H 0.08 2.21 7.74 -52.49 -0.41 1.81 14 9 C 0.47 12.78 1.85 -29.03 -0.05 12.72 14 10 F -0.22 -6.31 16.56 2.25 0.04 -6.27 14 11 F -0.21 -6.07 16.30 2.25 0.04 -6.03 14 12 C 0.01 0.14 5.98 -81.79 -0.49 -0.34 14 13 C -0.19 -3.99 10.42 -39.79 -0.41 -4.41 14 14 C -0.21 -3.69 10.86 -39.78 -0.43 -4.12 14 15 C -0.03 -0.48 11.94 -16.75 -0.20 -0.68 14 16 N -0.54 -10.49 6.03 -9.12 -0.06 -10.55 14 17 H 0.41 7.09 8.96 -40.82 -0.37 6.72 14 18 H 0.27 7.40 8.31 -40.82 -0.34 7.06 14 19 H 0.13 2.82 8.06 -52.48 -0.42 2.40 14 20 H 0.13 1.92 8.06 -52.48 -0.42 1.50 14 21 H 0.16 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 206.58 15.07 3.11 3.11 Total: -1.00 -31.65 206.58 -4.35 -35.99 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -1.18 Total: 3.68 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.98 Total: -11.42 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.64 Total: -35.06 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -31.65 -4.35 -35.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259027072.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.796 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds