Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.57491 * 300.25680 * 9 7 2 11 11 S 1.81748 * 109.57606 * 60.64567 * 9 7 2 12 12 C 1.81750 * 102.21996 * 173.07299 * 11 9 7 13 13 C 1.53093 * 108.83893 * 306.73203 * 12 11 9 14 14 C 1.52580 * 109.95878 * 63.02876 * 13 12 11 15 15 C 1.52581 * 110.72558 * 289.32636 * 14 13 12 16 16 H 1.08998 * 109.39131 * 190.82754 * 15 14 13 17 17 O 1.42898 * 109.30627 * 310.57261 * 15 14 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.57755 * 186.92730 * 12 11 9 20 20 H 1.09000 * 109.68481 * 66.60876 * 12 11 9 21 21 H 1.08992 * 109.39621 * 302.87413 * 13 12 11 22 22 H 1.09006 * 109.31161 * 183.12222 * 13 12 11 23 23 H 1.08994 * 109.23187 * 168.99555 * 14 13 12 24 24 H 1.09006 * 109.18924 * 49.62236 * 14 13 12 25 25 H 0.96699 * 113.99982 * 300.44714 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6206 -2.5569 0.8868 11 16 0.2190 -2.6064 -1.4927 12 6 -0.4175 -4.3062 -1.3988 13 6 0.7631 -5.2682 -1.2421 14 6 1.4910 -4.9900 0.0697 15 6 2.2437 -3.6647 -0.0011 16 1 2.9049 -3.5775 0.8611 17 8 3.0203 -3.6258 -1.2001 18 1 -0.4850 0.8401 0.0004 19 1 -0.9627 -4.5431 -2.3125 20 1 -1.0833 -4.4021 -0.5411 21 1 1.4532 -5.1330 -2.0747 22 1 0.3944 -6.2941 -1.2407 23 1 2.1992 -5.7951 0.2650 24 1 0.7640 -4.9470 0.8808 25 1 3.6723 -4.3365 -1.2696 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259567768.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = -63.110556 kcal Electronic energy + Delta-G solvation = -10211.198091 eV Core-core repulsion = 8315.394698 eV Total energy + Delta-G solvation = -1895.803393 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.47924 -33.39881 -33.10487 -29.65144 -26.95114 -24.09783 -21.34026 -19.72175 -16.85604 -16.25840 -15.16138 -14.79726 -14.00555 -13.45107 -13.23810 -12.40597 -12.19301 -11.87159 -11.43393 -11.17287 -10.89386 -10.60623 -10.38879 -10.34379 -9.61232 -9.56326 -8.86942 -8.49820 -8.14895 -6.20781 -5.73107 -4.12930 3.19127 3.35420 3.39824 3.43889 4.30727 4.41360 5.14527 5.33748 5.39042 5.53628 5.60986 5.98630 6.11252 6.17546 6.29099 6.42804 6.56840 6.72060 6.80412 7.24464 7.79227 8.07866 8.53519 8.80894 9.42246 10.92814 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.059435 B = 0.015339 C = 0.013403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.990961 B = 1824.981271 C = 2088.590660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.484 4.484 8 H 0.070 0.930 9 C 0.116 3.884 10 H 0.049 0.951 11 S -0.278 6.278 12 C -0.109 4.109 13 C -0.108 4.108 14 C -0.159 4.159 15 C 0.110 3.890 16 H 0.049 0.951 17 O -0.534 6.534 18 H 0.265 0.735 19 H 0.077 0.923 20 H 0.059 0.941 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -7.566 0.350 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.528 4.528 8 H 0.088 0.912 9 C -0.009 4.009 10 H 0.067 0.933 11 S -0.047 6.047 12 C -0.257 4.257 13 C -0.147 4.147 14 C -0.197 4.197 15 C 0.049 3.951 16 H 0.067 0.933 17 O -0.336 6.336 18 H 0.075 0.925 19 H 0.095 0.905 20 H 0.078 0.922 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.584 -6.186 -0.583 6.412 hybrid contribution 0.822 -0.603 1.057 1.469 sum 2.406 -6.789 0.475 7.218 Atomic orbital electron populations 1.70067 1.05894 1.26964 1.44869 1.25169 0.95027 0.99783 0.94403 0.86449 0.80076 0.82665 0.78127 1.20473 1.19522 1.20946 1.20812 0.93232 0.88678 1.50070 0.91183 1.20794 0.92821 0.94573 0.92723 0.93327 1.87570 1.64560 1.10275 1.42272 1.23325 0.99205 1.00169 1.03019 1.21543 0.97418 0.97349 0.98439 1.22262 1.00166 0.98753 0.98530 1.21952 0.92643 0.93843 0.86690 0.93339 1.86879 1.52448 1.52956 1.41316 0.92526 0.90474 0.92200 0.90576 0.93404 0.92759 0.91751 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.48 12.22 55.43 0.68 -23.80 15 2 C 0.07 1.83 5.28 -17.82 -0.09 1.74 15 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.48 -13.53 8.28 -34.44 -0.29 -13.81 15 8 H 0.07 1.94 7.75 -52.49 -0.41 1.54 15 9 C 0.12 2.98 2.26 -27.84 -0.06 2.91 15 10 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 11 S -0.28 -7.17 19.90 -107.50 -2.14 -9.31 15 12 C -0.11 -2.20 6.45 37.21 0.24 -1.96 15 13 C -0.11 -1.89 5.66 -26.90 -0.15 -2.05 15 14 C -0.16 -2.76 5.39 -27.16 -0.15 -2.91 15 15 C 0.11 2.29 3.10 -26.90 -0.08 2.21 15 16 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 17 O -0.53 -11.02 11.26 -35.23 -0.40 -11.42 15 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 19 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 20 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.08 1.38 7.15 -51.93 -0.37 1.01 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.06 1.13 8.08 -51.93 -0.42 0.71 15 25 H 0.35 5.25 9.07 45.56 0.41 5.66 15 LS Contribution 219.88 15.07 3.31 3.31 Total: -1.00 -30.73 219.88 -6.60 -37.34 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -2.46 Total: 1.34 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.58 Total: -13.87 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.68 Total: -23.80 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.40 Total: -11.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -2.14 Total: -9.31 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.73 -6.60 -37.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259567768.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.775 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds