Wall clock time and date at job start Mon Mar 30 2020 02:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46843 * 111.00190 * 2 1 4 4 C 1.53040 * 109.52392 * 185.84009 * 3 2 1 5 5 C 1.53115 * 109.27691 * 300.82256 * 4 3 2 6 6 H 1.08999 * 109.52634 * 177.56021 * 5 4 3 7 7 F 1.39902 * 109.52660 * 297.74721 * 5 4 3 8 8 C 1.53119 * 109.16284 * 57.65464 * 5 4 3 9 9 H 1.09002 * 109.50244 * 62.28522 * 8 5 4 10 10 C 1.50700 * 109.50255 * 182.36459 * 8 5 4 11 11 H 1.07992 * 120.00329 * 359.92032 * 10 8 5 12 12 C 1.37881 * 119.99818 * 179.97438 * 10 8 5 13 13 N 1.31518 * 119.99934 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00022 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46940 * 120.00173 * 14 12 10 17 17 H 1.48504 * 109.47070 * 240.00090 * 14 12 10 18 18 C 1.46846 * 110.99745 * 124.21268 * 2 1 3 19 19 H 1.09008 * 109.46813 * 56.04478 * 1 2 3 20 20 H 1.08999 * 109.47285 * 176.04551 * 1 2 3 21 21 H 1.09003 * 109.47153 * 296.04811 * 1 2 3 22 22 H 1.08997 * 109.46271 * 65.82450 * 3 2 1 23 23 H 1.08996 * 109.46613 * 305.85583 * 3 2 1 24 24 H 1.09001 * 109.50523 * 180.88031 * 4 3 2 25 25 H 1.08999 * 109.50216 * 60.76494 * 4 3 2 26 26 H 0.97001 * 119.99543 * 179.97438 * 13 12 10 27 27 H 1.08996 * 109.46322 * 54.14706 * 18 2 1 28 28 H 1.08991 * 109.46240 * 294.17139 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5368 1.0143 6 1 5.1997 0.4712 0.8905 7 9 3.8235 1.1766 2.2230 8 6 3.5181 -0.8716 1.0207 9 1 3.7813 -1.3837 0.0952 10 6 4.0605 -1.6445 2.1953 11 1 4.7643 -1.1792 2.8694 12 6 3.6590 -2.9462 2.4086 13 7 2.8031 -3.5134 1.5867 14 14 4.3308 -3.9041 3.8648 15 1 5.2697 -3.0460 4.6312 16 1 3.2087 -4.3181 4.7450 17 1 5.0475 -5.1095 3.3763 18 6 1.9952 -0.7708 1.1337 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3634 -1.0252 -0.0709 21 1 -0.3633 0.4513 0.9233 22 1 1.7325 1.8608 0.9376 23 1 1.5635 1.9257 -0.8329 24 1 3.9100 2.3511 -0.1310 25 1 3.7814 0.8567 -1.0907 26 1 2.5210 -4.4293 1.7366 27 1 1.5634 -1.7716 1.1241 28 1 1.7325 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259604762.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:37 Heat of formation + Delta-G solvation = -57.639459 kcal Electronic energy + Delta-G solvation = -12222.430331 eV Core-core repulsion = 9994.202763 eV Total energy + Delta-G solvation = -2228.227568 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.53903 -37.54516 -33.38246 -31.78808 -29.61630 -25.88464 -24.96698 -21.98132 -21.37213 -18.59949 -16.47915 -15.39992 -14.84459 -14.50465 -14.26826 -13.88001 -13.81632 -13.16125 -12.18675 -12.12364 -11.48820 -11.29229 -11.05060 -11.01615 -10.78912 -10.62479 -10.37323 -10.13599 -9.71509 -8.93838 -8.83858 -8.40807 -7.44938 -6.03174 -4.09423 3.29382 3.37398 3.42748 4.41322 4.77638 5.30022 5.39493 5.53608 5.70126 5.84879 6.01438 6.08585 6.15874 6.20950 6.37533 6.39946 6.52559 6.73929 6.88531 7.05646 7.58388 7.75237 7.86267 8.00905 8.10657 8.40477 8.94002 9.55120 11.03071 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.047083 B = 0.014917 C = 0.012367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.555761 B = 1876.566633 C = 2263.633782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.548 5.548 3 C 0.059 3.941 4 C -0.141 4.141 5 C 0.091 3.909 6 H 0.066 0.934 7 F -0.222 7.222 8 C 0.032 3.968 9 H 0.050 0.950 10 C -0.514 4.514 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.062 3.938 19 H 0.054 0.946 20 H 0.065 0.935 21 H 0.014 0.986 22 H 0.028 0.972 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.261 0.739 27 H 0.108 0.892 28 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 6.237 -2.760 6.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.273 5.273 3 C -0.070 4.070 4 C -0.179 4.179 5 C 0.055 3.945 6 H 0.084 0.916 7 F -0.203 7.203 8 C 0.013 3.987 9 H 0.068 0.932 10 C -0.552 4.552 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.064 4.064 19 H 0.072 0.928 20 H 0.084 0.916 21 H 0.033 0.967 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -1.447 5.851 -3.183 6.816 hybrid contribution -0.035 -0.128 1.584 1.589 sum -1.482 5.723 -1.599 6.124 Atomic orbital electron populations 1.22244 0.89031 1.01616 0.98867 1.62123 1.06270 1.12179 1.46684 1.21926 0.95005 0.90710 0.99339 1.22178 0.95861 0.99874 0.99955 1.21803 0.99298 0.94557 0.78851 0.91553 1.92690 1.95205 1.83668 1.48734 1.19257 0.91402 0.89031 0.98994 0.93245 1.21128 1.26109 0.97115 1.10883 0.92168 1.24973 0.94987 0.97518 0.96426 1.69888 1.32399 1.13610 1.36785 0.86494 0.78895 0.79826 0.82592 1.19710 1.21007 1.20944 1.22397 0.98217 0.98469 0.87363 0.92766 0.91605 0.96731 0.95402 0.92034 0.92057 0.90075 0.92912 0.87429 0.96938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 60.06 0.58 1.13 15 2 N -0.55 -11.50 4.91 -242.96 -1.19 -12.69 15 3 C 0.06 1.09 5.35 -3.83 -0.02 1.07 15 4 C -0.14 -2.56 5.88 -26.65 -0.16 -2.71 15 5 C 0.09 2.00 3.53 -26.61 -0.09 1.90 15 6 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 7 F -0.22 -5.22 15.87 2.25 0.04 -5.19 15 8 C 0.03 0.82 2.12 -91.69 -0.19 0.62 15 9 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 10 C -0.51 -14.31 8.27 -34.44 -0.28 -14.59 15 11 H 0.06 1.69 7.70 -52.49 -0.40 1.29 15 12 C 0.06 1.73 5.30 -17.82 -0.09 1.64 15 13 N -0.89 -25.25 11.34 55.43 0.63 -24.62 15 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 18 C 0.06 1.53 4.40 -3.83 -0.02 1.52 15 19 H 0.05 0.82 8.10 -51.92 -0.42 0.39 15 20 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 22 H 0.03 0.54 7.87 -51.93 -0.41 0.13 15 23 H 0.06 0.98 8.09 -51.93 -0.42 0.56 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 27 H 0.11 2.93 6.09 -51.93 -0.32 2.61 15 28 H 0.01 0.32 7.87 -51.93 -0.41 -0.09 15 LS Contribution 230.32 15.07 3.47 3.47 Total: -1.00 -28.82 230.32 -6.41 -35.23 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.05 Total: -3.17 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.29 Total: -9.42 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.56 Total: -37.31 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.04 Total: -5.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.82 -6.41 -35.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259604762.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds