Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99650 * 2 1 4 4 H 1.48500 * 109.47287 * 269.99785 * 3 2 1 5 5 H 1.48495 * 109.47452 * 30.00031 * 3 2 1 6 6 H 1.48513 * 109.47137 * 150.00336 * 3 2 1 7 7 C 1.37883 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99576 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.38838 * 299.80135 * 9 7 2 11 11 C 1.52578 * 109.38843 * 180.02562 * 9 7 2 12 12 C 1.52586 * 110.72522 * 169.27522 * 11 9 7 13 13 C 1.53099 * 109.95763 * 70.67202 * 12 11 9 14 14 S 1.81746 * 108.84269 * 296.97792 * 13 12 11 15 15 O 1.42105 * 109.46730 * 297.26897 * 14 13 12 16 16 C 1.53102 * 109.31075 * 59.55405 * 9 7 2 17 17 H 0.96993 * 120.00370 * 0.02562 * 1 2 3 18 18 H 1.08993 * 109.22653 * 48.95233 * 11 9 7 19 19 H 1.09004 * 109.22577 * 289.58988 * 11 9 7 20 20 H 1.08997 * 109.38838 * 310.52653 * 12 11 9 21 21 H 1.08999 * 109.30993 * 190.77635 * 12 11 9 22 22 H 1.08996 * 109.57378 * 177.16519 * 13 12 11 23 23 H 1.08999 * 109.57574 * 56.78139 * 13 12 11 24 24 H 1.08998 * 109.57449 * 63.31557 * 16 9 7 25 25 H 1.09008 * 109.57157 * 302.92935 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6280 -2.5573 0.8919 11 6 2.2444 -3.6574 -0.0005 12 6 1.5314 -4.9801 0.2650 13 6 0.6797 -5.3672 -0.9469 14 16 -0.6073 -4.1066 -1.1866 15 8 -1.4631 -4.0819 -0.0523 16 6 0.3635 -2.5713 -1.2459 17 1 -0.4850 0.8400 -0.0004 18 1 2.9910 -3.4900 0.7756 19 1 2.7400 -3.7053 -0.9702 20 1 0.8897 -4.8759 1.1399 21 1 2.2722 -5.7580 0.4502 22 1 0.2134 -6.3365 -0.7708 23 1 1.3100 -5.4189 -1.8346 24 1 0.9873 -2.5683 -2.1397 25 1 -0.3094 -1.7139 -1.2648 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259757008.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = -80.733860 kcal Electronic energy + Delta-G solvation = -10183.039964 eV Core-core repulsion = 8286.472368 eV Total energy + Delta-G solvation = -1896.567597 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.99448 -36.46943 -34.76242 -31.79333 -27.89483 -27.07164 -23.34880 -21.19687 -18.74162 -18.10781 -16.80071 -16.09567 -15.85449 -15.37452 -14.56711 -14.43425 -14.25857 -13.80818 -12.96546 -12.89221 -12.52852 -12.44738 -12.26790 -12.01774 -11.65161 -11.44368 -11.23487 -10.62197 -10.31166 -8.91874 -8.12199 -6.31653 1.11015 1.37653 1.38959 1.49218 2.00485 2.38849 3.09705 3.19611 4.00721 4.06899 4.27794 4.56637 4.69258 4.87035 4.89142 5.03282 5.09415 5.22921 5.31999 5.51949 5.82269 6.04761 6.27241 6.81068 7.38154 8.90142 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.062814 B = 0.013729 C = 0.012065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.652157 B = 2039.044610 C = 2320.222158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.041 3.959 10 H -0.033 1.033 11 C -0.116 4.116 12 C -0.117 4.117 13 C -0.428 4.428 14 S 1.262 4.738 15 O -0.940 6.940 16 C -0.412 4.412 17 H 0.261 0.739 18 H 0.046 0.954 19 H 0.085 0.915 20 H 0.020 0.980 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.156 0.844 24 H 0.121 0.879 25 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -8.465 -8.202 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.022 3.978 10 H -0.015 1.015 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.566 4.566 14 S 1.465 4.535 15 O -0.936 6.936 16 C -0.551 4.551 17 H 0.070 0.930 18 H 0.065 0.935 19 H 0.103 0.897 20 H 0.039 0.961 21 H 0.104 0.896 22 H 0.137 0.863 23 H 0.174 0.826 24 H 0.139 0.861 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.748 -8.490 -8.263 11.976 hybrid contribution 1.260 1.563 2.389 3.121 sum 3.008 -6.927 -5.874 9.567 Atomic orbital electron populations 1.70020 1.07599 1.27284 1.51262 1.25881 0.95638 1.02967 0.94750 0.85506 0.78362 0.78756 0.78725 1.18986 1.21480 1.19385 1.21597 0.93146 0.91793 1.50380 0.92290 1.18547 0.93161 0.94305 0.91821 1.01488 1.21611 0.98264 0.93195 1.02311 1.21425 0.99242 0.98129 0.96686 1.27580 1.12220 1.12385 1.04458 1.68372 0.85417 0.88361 1.11364 1.92937 1.56121 1.85929 1.58564 1.27501 1.09551 1.14229 1.03824 0.92987 0.93549 0.89683 0.96130 0.89595 0.86330 0.82579 0.86053 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.87 11.26 21.45 0.24 -55.63 15 2 C 0.01 0.33 5.29 84.66 0.45 0.78 15 3 Si 0.96 44.26 29.54 68.60 2.03 46.28 15 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 7 C -0.53 -29.79 8.52 25.60 0.22 -29.57 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 15 9 C 0.04 2.12 1.96 -11.64 -0.02 2.09 15 10 H -0.03 -2.10 8.06 -2.39 -0.02 -2.12 15 11 C -0.12 -4.71 4.86 30.32 0.15 -4.56 15 12 C -0.12 -4.07 5.75 30.49 0.18 -3.90 15 13 C -0.43 -11.53 6.44 72.02 0.46 -11.07 15 14 S 1.26 43.73 13.75 -56.49 -0.78 42.96 15 15 O -0.94 -48.10 18.14 -148.98 -2.70 -50.80 15 16 C -0.41 -18.26 5.52 72.02 0.40 -17.87 15 17 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 18 H 0.05 1.93 8.08 -2.39 -0.02 1.91 15 19 H 0.08 2.93 8.08 -2.39 -0.02 2.92 15 20 H 0.02 0.85 8.06 -2.39 -0.02 0.83 15 21 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.12 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.16 2.85 8.14 -2.39 -0.02 2.83 15 24 H 0.12 4.47 8.14 -2.39 -0.02 4.45 15 25 H 0.10 5.24 5.96 -2.38 -0.01 5.23 15 Total: -1.00 -79.17 219.20 1.77 -77.39 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.16 Total: 3.89 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 1.83 Total: -64.09 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.24 Total: -55.63 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -2.70 Total: -50.80 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 43.73 SS G_CDS: -0.78 Total: 42.96 kcal Total: -79.17 1.77 -77.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757008.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -79.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds