Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34628 * 126.33281 * 2 1 4 4 C 1.34944 * 107.62243 * 179.97438 * 3 2 1 5 5 C 1.39762 * 125.77998 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.40330 * 120.00157 * 179.97438 * 5 4 3 8 8 N 1.30637 * 119.99606 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47165 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47206 * 120.00018 * 9 7 5 12 12 H 1.48495 * 109.46984 * 240.00132 * 9 7 5 13 13 N 1.32838 * 108.44071 * 0.02562 * 4 3 2 14 14 C 1.33104 * 108.65455 * 359.97438 * 13 4 3 15 15 Cl 1.73600 * 126.02484 * 180.02562 * 14 13 4 16 16 H 1.09009 * 109.47054 * 0.02562 * 1 2 3 17 17 H 1.08989 * 109.47400 * 120.02305 * 1 2 3 18 18 H 1.09000 * 109.46874 * 240.02726 * 1 2 3 19 19 H 0.96996 * 119.99425 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3047 1.0845 0.0000 4 6 3.5828 0.6517 0.0006 5 6 4.7205 1.4635 0.0003 6 1 4.6168 2.5385 -0.0001 7 6 5.9975 0.8818 0.0015 8 7 6.1229 -0.4186 0.0024 9 14 7.5181 1.9668 0.0018 10 1 7.1079 3.3940 0.0000 11 1 8.3269 1.6852 1.2150 12 1 8.3284 1.6836 -1.2100 13 7 3.5765 -0.6767 0.0004 14 6 2.3134 -1.0965 0.0002 15 17 1.7874 -2.7509 0.0006 16 1 -0.3634 1.0278 -0.0005 17 1 -0.3633 -0.5141 -0.8897 18 1 -0.3633 -0.5134 0.8902 19 1 7.0056 -0.8206 0.0029 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820606.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -25.796658 kcal Electronic energy + Delta-G solvation = -9318.371257 eV Core-core repulsion = 7248.194682 eV Total energy + Delta-G solvation = -2070.176574 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 187.014 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.15952 -37.53556 -35.95743 -34.41804 -32.70926 -29.73986 -25.81610 -23.10177 -21.87811 -19.54501 -17.77111 -17.04259 -16.29307 -15.39726 -15.10716 -14.26213 -13.76797 -13.36206 -13.25050 -13.09546 -12.96699 -12.86354 -12.00483 -11.88087 -11.57109 -10.93505 -10.37954 -9.33918 -8.65787 -6.76043 0.90662 1.10022 1.41765 1.51087 1.62028 2.15485 2.25055 2.73457 3.18059 4.28611 4.53090 4.69109 4.79516 4.94610 5.10579 5.52630 5.71795 6.01079 6.38997 6.58876 7.70253 8.29951 Molecular weight = 187.01amu Principal moments of inertia in cm(-1) A = 0.067107 B = 0.012717 C = 0.010753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.144122 B = 2201.281335 C = 2603.282454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.174 4.174 3 O -0.249 6.249 4 C 0.306 3.694 5 C -0.457 4.457 6 H 0.109 0.891 7 C 0.027 3.973 8 N -0.766 5.766 9 Si 1.018 2.982 10 H -0.247 1.247 11 H -0.261 1.261 12 H -0.262 1.262 13 N -0.572 5.572 14 C 0.046 3.954 15 Cl -0.021 7.021 16 H 0.079 0.921 17 H 0.084 0.916 18 H 0.084 0.916 19 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 1.335 0.001 3.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.230 4.230 3 O -0.146 6.146 4 C 0.123 3.877 5 C -0.492 4.492 6 H 0.127 0.873 7 C -0.195 4.195 8 N -0.390 5.390 9 Si 0.836 3.164 10 H -0.169 1.169 11 H -0.186 1.186 12 H -0.186 1.186 13 N -0.306 5.306 14 C -0.105 4.105 15 Cl 0.007 6.993 16 H 0.098 0.902 17 H 0.102 0.898 18 H 0.102 0.898 19 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.655 0.633 0.002 2.729 hybrid contribution -0.080 0.169 0.000 0.187 sum -2.735 0.802 0.002 2.850 Atomic orbital electron populations 1.19984 0.82006 1.03718 1.03330 1.23257 0.95411 0.83176 1.21179 1.84480 1.18491 1.35467 1.76209 1.22559 0.82223 0.88243 0.94661 1.18807 0.87099 0.94701 1.48562 0.87293 1.27146 1.03480 0.97086 0.91786 1.70099 1.27114 1.12971 1.28855 0.84637 0.74223 0.78425 0.79157 1.16943 1.18589 1.18599 1.71088 1.18049 1.09335 1.32109 1.22181 0.92091 0.87071 1.09132 1.98230 1.88355 1.15344 1.97400 0.90220 0.89765 0.89766 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.13 10.24 71.24 0.73 -0.40 13 2 C -0.17 -8.40 7.43 25.19 0.19 -8.21 13 3 O -0.25 -13.64 10.82 -12.09 -0.13 -13.77 13 4 C 0.31 18.14 7.74 84.91 0.66 18.80 13 5 C -0.46 -25.18 9.45 23.15 0.22 -24.96 13 6 H 0.11 5.47 7.85 -2.91 -0.02 5.45 13 7 C 0.03 1.36 5.50 85.38 0.47 1.83 13 8 N -0.77 -42.15 11.88 21.89 0.26 -41.89 13 9 Si 1.02 36.86 29.56 68.60 2.03 38.88 13 10 H -0.25 -8.37 7.11 99.48 0.71 -7.66 13 11 H -0.26 -9.02 7.11 99.48 0.71 -8.31 13 12 H -0.26 -9.02 7.11 99.48 0.71 -8.32 13 13 N -0.57 -34.52 9.43 -300.24 -2.83 -37.35 13 14 C 0.05 2.38 7.72 84.00 0.65 3.03 13 15 Cl -0.02 -0.90 29.10 -2.72 -0.08 -0.98 13 16 H 0.08 2.36 8.14 -2.38 -0.02 2.34 13 17 H 0.08 2.48 8.14 -2.39 -0.02 2.46 13 18 H 0.08 2.48 8.14 -2.39 -0.02 2.46 13 19 H 0.29 14.15 8.29 -92.71 -0.77 13.38 13 Total: -1.00 -66.63 200.75 3.43 -63.20 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.27 Total: 1.81 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 2.91 Total: -9.91 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.57 Total: -79.24 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.13 Total: -13.77 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -66.63 3.43 -63.20 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820606.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.405 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds