Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.84444 * 2 1 4 4 S 1.83945 * 110.78951 * 236.57929 * 2 1 3 5 5 C 1.83956 * 94.80829 * 207.23129 * 4 2 1 6 6 C 1.54265 * 102.57732 * 34.49342 * 5 4 2 7 7 H 1.09004 * 108.75385 * 214.72729 * 6 5 4 8 8 C 1.50706 * 108.86711 * 96.29293 * 6 5 4 9 9 H 1.08005 * 119.99758 * 236.92246 * 8 6 5 10 10 C 1.37871 * 120.00102 * 56.92131 * 8 6 5 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.52326 * 112.58832 * 335.47335 * 6 5 4 17 17 H 1.09004 * 108.87250 * 120.81774 * 16 6 5 18 18 N 1.46906 * 108.86511 * 239.32480 * 16 6 5 19 19 H 1.08997 * 109.47830 * 296.58307 * 1 2 3 20 20 H 1.09005 * 109.47032 * 56.58310 * 1 2 3 21 21 H 1.09000 * 109.47264 * 176.58173 * 1 2 3 22 22 H 1.08995 * 110.79026 * 276.22108 * 5 4 2 23 23 H 1.09000 * 110.79098 * 152.76179 * 5 4 2 24 24 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 25 25 H 1.00901 * 110.99641 * 180.02562 * 18 16 6 26 26 H 1.00899 * 111.00212 * 303.95227 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 16 2.1829 -0.9472 -1.4353 5 6 3.7614 -1.4080 -0.6108 6 6 3.3324 -1.5862 0.8603 7 1 4.1462 -1.2545 1.5052 8 6 3.0723 -3.0480 1.1184 9 1 2.1094 -3.3679 1.4886 10 6 4.0633 -3.9768 0.8821 11 7 5.2360 -3.5872 0.4317 12 14 3.7410 -5.7886 1.2028 13 1 4.9569 -6.5740 0.8712 14 1 3.3995 -5.9848 2.6346 15 1 2.6100 -6.2475 0.3568 16 6 2.0774 -0.7942 1.2038 17 1 1.3083 -1.4849 1.5495 18 7 2.3913 0.1469 2.2873 19 1 -0.3635 0.4598 0.9190 20 1 -0.3633 0.5660 -0.8578 21 1 -0.3634 -1.0258 -0.0613 22 1 4.4953 -0.6078 -0.7055 23 1 4.1512 -2.3419 -1.0158 24 1 5.4034 -2.6463 0.2656 25 1 1.5794 0.6895 2.5413 26 1 2.7677 -0.3369 3.0887 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898396.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -11.746152 kcal Electronic energy + Delta-G solvation = -10073.025163 eV Core-core repulsion = 8277.167760 eV Total energy + Delta-G solvation = -1795.857403 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.12322 -33.62465 -30.90057 -29.69295 -25.43940 -24.21731 -21.86363 -19.06697 -17.19938 -16.08829 -15.06046 -14.22654 -13.78316 -13.59148 -13.14524 -12.90530 -12.60830 -11.85126 -11.41374 -10.90329 -10.83380 -10.65508 -10.43770 -10.15001 -9.90820 -9.16617 -8.62312 -8.39353 -8.14201 -6.86378 -6.41499 -4.17622 2.69326 3.25387 3.39892 3.42626 3.60498 4.46555 5.01172 5.19378 5.38650 5.47884 5.67179 5.92874 6.02566 6.14751 6.28264 6.35931 6.48608 6.66816 7.10132 7.17481 7.68952 7.90205 8.10837 8.29861 8.75076 9.52188 10.92780 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.047616 B = 0.014518 C = 0.013680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.899731 B = 1928.202268 C = 2046.241502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 H 0.091 0.909 4 S -0.331 6.331 5 C -0.044 4.044 6 C 0.030 3.970 7 H 0.037 0.963 8 C -0.586 4.586 9 H 0.051 0.949 10 C 0.019 3.981 11 N -0.910 5.910 12 Si 1.067 2.933 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.287 1.287 16 C 0.106 3.894 17 H 0.045 0.955 18 N -0.847 5.847 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.115 0.885 24 H 0.273 0.727 25 H 0.326 0.674 26 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 4.963 1.412 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 H 0.109 0.891 4 S -0.105 6.105 5 C -0.193 4.193 6 C 0.010 3.990 7 H 0.055 0.945 8 C -0.625 4.625 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.547 5.547 12 Si 0.895 3.105 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.213 1.213 16 C -0.006 4.006 17 H 0.063 0.937 18 N -0.377 5.377 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.133 0.867 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.552 3.522 -0.293 6.582 hybrid contribution -0.936 1.257 1.680 2.297 sum -6.488 4.779 1.387 8.177 Atomic orbital electron populations 1.21681 0.93184 1.02731 1.01246 1.23820 0.97639 1.00485 0.94269 0.89096 1.87376 1.27363 1.69465 1.26337 1.24605 0.91978 1.03235 0.99469 1.19292 0.92704 0.96143 0.90822 0.94525 1.22058 1.01242 0.91001 1.48154 0.93115 1.25815 0.92923 1.05876 0.93873 1.70854 1.22731 1.19574 1.41568 0.83554 0.75887 0.74706 0.76320 1.20675 1.21483 1.21300 1.22141 0.97853 0.90773 0.89840 0.93742 1.59022 1.35998 1.29653 1.13036 0.92306 0.92442 0.91588 0.92460 0.86735 0.91509 0.86342 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.19 37.16 0.34 -1.67 15 2 C -0.03 -0.62 3.51 -26.07 -0.09 -0.71 15 3 H 0.09 1.66 8.05 -51.93 -0.42 1.25 15 4 S -0.33 -7.24 22.73 -107.50 -2.44 -9.69 15 5 C -0.04 -1.07 5.62 37.82 0.21 -0.86 15 6 C 0.03 0.74 2.09 -91.45 -0.19 0.55 15 7 H 0.04 0.96 7.63 -51.93 -0.40 0.57 15 8 C -0.59 -15.88 8.48 -34.44 -0.29 -16.17 15 9 H 0.05 1.38 7.19 -52.48 -0.38 1.01 15 10 C 0.02 0.52 5.03 -17.82 -0.09 0.44 15 11 N -0.91 -26.44 12.73 55.43 0.71 -25.73 15 12 Si 1.07 24.74 29.90 -169.99 -5.08 19.66 15 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 16 C 0.11 2.17 3.00 -67.40 -0.20 1.97 15 17 H 0.04 0.97 6.78 -51.93 -0.35 0.61 15 18 N -0.85 -14.77 8.98 -4.39 -0.04 -14.81 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.06 1.31 8.14 -51.93 -0.42 0.88 15 23 H 0.11 3.07 5.78 -51.93 -0.30 2.77 15 24 H 0.27 7.81 5.69 -40.82 -0.23 7.58 15 25 H 0.33 4.70 8.99 -39.29 -0.35 4.35 15 26 H 0.34 5.92 8.91 -39.29 -0.35 5.57 15 LS Contribution 224.16 15.07 3.38 3.38 Total: -1.00 -28.79 224.16 -7.06 -35.85 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.27 Total: 7.79 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.31 Total: -16.44 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.67 Total: -40.54 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -2.44 Total: -9.69 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.79 -7.06 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898396.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.104 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds