Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.69846 * 2 1 4 4 S 1.83954 * 110.95099 * 236.57071 * 2 1 3 5 5 C 1.83963 * 94.80971 * 207.15600 * 4 2 1 6 6 C 1.54266 * 102.57737 * 34.49208 * 5 4 2 7 7 H 1.09001 * 108.75268 * 96.21178 * 6 5 4 8 8 C 1.50691 * 108.86932 * 214.65277 * 6 5 4 9 9 H 1.08001 * 120.00133 * 58.04574 * 8 6 5 10 10 C 1.37884 * 119.99938 * 237.77307 * 8 6 5 11 11 N 1.31507 * 120.00030 * 0.27257 * 10 8 6 12 12 Si 1.86795 * 119.99929 * 180.27433 * 10 8 6 13 13 H 1.48500 * 109.47035 * 89.99901 * 12 10 8 14 14 H 1.48503 * 109.47193 * 209.99726 * 12 10 8 15 15 H 1.48501 * 109.47298 * 330.00089 * 12 10 8 16 16 C 1.52336 * 112.58981 * 335.47317 * 6 5 4 17 17 H 1.08998 * 108.86760 * 120.81461 * 16 6 5 18 18 N 1.46892 * 108.86818 * 239.17986 * 16 6 5 19 19 H 1.08998 * 109.47015 * 296.68341 * 1 2 3 20 20 H 1.08999 * 109.46716 * 56.68586 * 1 2 3 21 21 H 1.08993 * 109.46907 * 176.68515 * 1 2 3 22 22 H 1.08996 * 110.78538 * 276.22211 * 5 4 2 23 23 H 1.08992 * 110.78925 * 152.76545 * 5 4 2 24 24 H 0.97001 * 120.00418 * 180.02562 * 11 10 8 25 25 H 1.00900 * 111.00122 * 173.54800 * 18 16 6 26 26 H 1.00901 * 110.99860 * 297.49786 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1878 -0.9464 -1.4337 5 6 3.7662 -1.4027 -0.6063 6 6 3.3352 -1.5811 0.8642 7 1 3.1486 -2.6390 1.0488 8 6 4.4566 -1.1215 1.7598 9 1 4.8291 -0.1106 1.6834 10 6 5.0034 -1.9898 2.6808 11 7 4.5499 -3.2207 2.7739 12 14 6.3882 -1.4178 3.7962 13 1 5.8165 -0.8485 5.0429 14 1 7.2607 -2.5712 4.1335 15 1 7.1883 -0.3790 3.0992 16 6 2.0775 -0.7921 1.2052 17 1 1.3097 -1.4846 1.5500 18 7 2.3862 0.1480 2.2909 19 1 -0.3633 0.4615 0.9182 20 1 -0.3633 0.5644 -0.8588 21 1 -0.3633 -1.0259 -0.0594 22 1 4.4982 -0.6006 -0.7003 23 1 4.1590 -2.3357 -1.0101 24 1 4.9342 -3.8315 3.4220 25 1 1.6051 0.7605 2.4719 26 1 2.6614 -0.3439 3.1278 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898451.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -8.223399 kcal Electronic energy + Delta-G solvation = -10045.452247 eV Core-core repulsion = 8249.747602 eV Total energy + Delta-G solvation = -1795.704645 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.82738 -32.88478 -30.73905 -30.15658 -25.23709 -24.31775 -21.91166 -18.76196 -16.54122 -15.76444 -14.73015 -14.53761 -14.19110 -13.35983 -13.02425 -12.55567 -12.46391 -11.64214 -11.34820 -11.03268 -10.74441 -10.69300 -10.48341 -10.35162 -9.58583 -9.06272 -8.81027 -8.55096 -7.51334 -7.00937 -6.06249 -4.04011 2.69995 3.17364 3.31400 3.36755 3.41724 4.41615 5.17933 5.27804 5.44539 5.71358 5.83769 6.01168 6.08942 6.25915 6.30699 6.43979 6.64437 6.71754 7.21818 7.63443 7.89621 8.04750 8.47099 8.54047 9.06113 9.54866 11.02422 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.059012 B = 0.013515 C = 0.012257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.368358 B = 2071.284313 C = 2283.914286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.025 4.025 3 H 0.093 0.907 4 S -0.370 6.370 5 C -0.025 4.025 6 C 0.019 3.981 7 H 0.078 0.922 8 C -0.469 4.469 9 H 0.065 0.935 10 C 0.054 3.946 11 N -0.902 5.902 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.274 1.274 16 C 0.106 3.894 17 H 0.021 0.979 18 N -0.818 5.818 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.261 0.739 25 H 0.304 0.696 26 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 4.281 -1.851 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 H 0.112 0.888 4 S -0.144 6.144 5 C -0.173 4.173 6 C -0.001 4.001 7 H 0.096 0.904 8 C -0.510 4.510 9 H 0.083 0.917 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.725 3.275 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.199 1.199 16 C -0.007 4.007 17 H 0.039 0.961 18 N -0.349 5.349 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.711 4.114 -3.362 7.101 hybrid contribution 0.441 -0.021 2.229 2.272 sum -4.270 4.094 -1.134 6.023 Atomic orbital electron populations 1.21697 0.93477 1.02407 1.01334 1.23856 0.97070 1.00854 0.93631 0.88836 1.87402 1.27949 1.70709 1.28338 1.24635 0.92196 1.02589 0.97910 1.19544 0.92364 0.98838 0.89391 0.90404 1.20936 1.15638 0.97723 1.16685 0.91691 1.25060 0.97036 0.94912 0.97635 1.69888 1.42808 1.05130 1.36294 0.86522 0.82098 0.78024 0.80891 1.20766 1.21605 1.19869 1.21998 0.96930 0.91665 0.90084 0.96144 1.59038 1.39908 1.24383 1.11603 0.92087 0.92604 0.91936 0.90398 0.89879 0.92903 0.88541 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.21 37.16 0.34 -1.64 15 2 C -0.03 -0.47 3.44 -26.07 -0.09 -0.56 15 3 H 0.09 1.76 8.05 -51.93 -0.42 1.34 15 4 S -0.37 -7.49 22.74 -107.50 -2.45 -9.94 15 5 C -0.03 -0.56 6.91 37.82 0.26 -0.30 15 6 C 0.02 0.46 2.91 -91.45 -0.27 0.20 15 7 H 0.08 2.12 6.87 -51.93 -0.36 1.76 15 8 C -0.47 -12.11 5.86 -34.44 -0.20 -12.31 15 9 H 0.06 1.73 7.76 -52.49 -0.41 1.32 15 10 C 0.05 1.44 5.46 -17.82 -0.10 1.34 15 11 N -0.90 -25.15 12.58 55.43 0.70 -24.45 15 12 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 16 C 0.11 2.22 3.31 -67.39 -0.22 2.00 15 17 H 0.02 0.44 7.78 -51.93 -0.40 0.04 15 18 N -0.82 -16.24 7.88 -4.40 -0.03 -16.28 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.08 1.72 7.85 -51.93 -0.41 1.32 15 23 H 0.08 1.80 8.14 -51.93 -0.42 1.38 15 24 H 0.26 7.00 8.31 -40.82 -0.34 6.67 15 25 H 0.30 5.06 8.91 -39.29 -0.35 4.71 15 26 H 0.35 7.48 8.09 -39.29 -0.32 7.16 15 LS Contribution 227.35 15.07 3.43 3.43 Total: -1.00 -27.00 227.35 -7.14 -34.14 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.49 Total: 8.58 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.27 Total: -11.27 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.66 Total: -40.73 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -2.45 Total: -9.94 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.00 -7.14 -34.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898451.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.920 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds