Wall clock time and date at job start Mon Mar 30 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48497 * 109.47236 * 240.00219 * 3 2 1 5 5 H 1.48508 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47125 * 119.99813 * 3 2 1 7 7 C 1.37874 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99956 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.85429 * 60.00121 * 9 7 2 11 11 C 1.54064 * 108.79603 * 301.48365 * 9 7 2 12 12 C 1.54069 * 112.81872 * 197.56002 * 11 9 7 13 13 C 1.50475 * 112.49860 * 318.28834 * 12 11 9 14 14 C 1.54241 * 108.53166 * 94.14303 * 13 12 11 15 15 C 1.45542 * 112.39914 * 280.02298 * 14 13 12 16 16 C 1.50474 * 108.87742 * 178.56174 * 9 7 2 17 17 H 1.08997 * 109.63093 * 95.12576 * 16 9 7 18 18 F 1.39901 * 109.63005 * 334.53612 * 16 9 7 19 19 H 0.96994 * 120.00389 * 0.02562 * 1 2 3 20 20 H 1.08995 * 108.81809 * 318.42461 * 11 9 7 21 21 H 1.09006 * 108.81266 * 76.70227 * 11 9 7 22 22 H 1.09002 * 108.87788 * 197.50939 * 12 11 9 23 23 H 1.08997 * 108.87752 * 79.05997 * 12 11 9 24 24 H 1.08999 * 109.62763 * 334.42823 * 13 12 11 25 25 H 1.09004 * 109.62390 * 213.85654 * 13 12 11 26 26 H 1.08994 * 108.89740 * 159.26772 * 14 13 12 27 27 H 1.09004 * 108.81230 * 40.72028 * 14 13 12 28 28 H 1.08996 * 108.89648 * 301.18200 * 15 14 13 29 29 H 1.08997 * 108.88954 * 182.69121 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6280 -2.5462 -0.8936 11 6 0.3438 -2.5485 1.2436 12 6 -0.1352 -3.9742 1.5776 13 6 -0.5299 -4.7512 0.3509 14 6 0.6852 -5.5775 -0.1180 15 6 1.6397 -4.7802 -0.8740 16 6 2.2404 -3.6324 -0.0369 17 1 2.4347 -3.9816 0.9772 18 9 3.4329 -3.1966 -0.6245 19 1 -0.4850 0.8400 -0.0004 20 1 0.8954 -2.1541 2.0969 21 1 -0.5273 -1.9170 1.0686 22 1 -0.9939 -3.9103 2.2459 23 1 0.6679 -4.5055 2.0882 24 1 -0.8304 -4.0619 -0.4382 25 1 -1.3566 -5.4198 0.5912 26 1 0.3341 -6.3966 -0.7455 27 1 1.1863 -5.9929 0.7564 28 1 1.1361 -4.3571 -1.7431 29 1 2.4471 -5.4273 -1.2164 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:31 Heat of formation + Delta-G solvation = -76.291286 kcal Electronic energy + Delta-G solvation = -12130.755902 eV Core-core repulsion = 9967.145441 eV Total energy + Delta-G solvation = -2163.610461 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.44221 -37.66719 -33.33234 -31.13922 -30.21394 -25.57071 -23.57594 -22.39739 -20.06316 -18.47927 -16.35826 -15.26150 -15.03678 -14.19212 -14.04947 -13.61353 -13.12629 -12.90311 -12.40643 -11.95915 -11.38016 -11.20831 -10.80927 -10.79549 -10.48014 -10.16527 -10.02085 -9.72081 -9.57981 -9.46264 -8.93517 -8.63823 -8.25046 -5.94629 -3.97650 3.37318 3.40648 3.45182 4.49607 5.13829 5.20703 5.38143 5.53460 5.87536 5.88642 6.00755 6.10290 6.22746 6.36157 6.37995 6.48197 6.63620 6.73981 6.83546 6.96150 6.99845 7.17145 7.46907 7.81266 7.95936 8.12495 8.46600 9.06942 9.65953 11.12696 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.050252 B = 0.014749 C = 0.012287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.055747 B = 1897.981690 C = 2278.228963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.021 3.979 10 H 0.034 0.966 11 C -0.099 4.099 12 C -0.125 4.125 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.143 4.143 16 C 0.105 3.895 17 H 0.062 0.938 18 F -0.217 7.217 19 H 0.259 0.741 20 H 0.040 0.960 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -7.896 1.026 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.003 3.997 10 H 0.052 0.948 11 C -0.138 4.138 12 C -0.163 4.163 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.181 4.181 16 C 0.068 3.932 17 H 0.080 0.920 18 F -0.198 7.198 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.102 0.898 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.351 -7.754 1.011 7.827 hybrid contribution 0.470 0.970 -0.009 1.078 sum 0.119 -6.784 1.001 6.859 Atomic orbital electron populations 1.69914 1.05853 1.26397 1.51111 1.24959 0.94830 0.99076 0.95163 0.86651 0.79565 0.83091 0.78658 1.20286 1.21444 1.20343 1.21298 0.93636 0.90166 1.50177 0.91589 1.19028 0.92735 0.92252 0.95720 0.94793 1.21926 1.01376 0.92348 0.98114 1.21535 0.99381 0.98683 0.96664 1.21347 0.96394 0.98305 0.99352 1.20357 0.96527 0.97933 0.99768 1.21077 0.99071 0.97842 1.00118 1.21311 0.82252 0.95281 0.94315 0.92005 1.92697 1.49244 1.91425 1.86454 0.93135 0.94089 0.89767 0.93837 0.93763 0.91005 0.93152 0.92794 0.92658 0.91357 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 11.41 55.43 0.63 -25.08 15 2 C 0.06 1.71 5.29 -17.82 -0.09 1.62 15 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.51 -14.55 8.00 -34.44 -0.28 -14.83 15 8 H 0.07 1.90 6.57 -52.49 -0.34 1.56 15 9 C 0.02 0.53 1.61 -92.48 -0.15 0.38 15 10 H 0.03 0.91 6.63 -51.93 -0.34 0.57 15 11 C -0.10 -2.31 4.65 -25.62 -0.12 -2.43 15 12 C -0.13 -2.30 5.31 -27.43 -0.15 -2.45 15 13 C -0.12 -1.95 5.61 -27.34 -0.15 -2.11 15 14 C -0.11 -1.68 5.27 -29.60 -0.16 -1.84 15 15 C -0.14 -2.57 5.01 -29.60 -0.15 -2.72 15 16 C 0.10 2.27 3.34 -27.34 -0.09 2.18 15 17 H 0.06 1.28 6.98 -51.93 -0.36 0.91 15 18 F -0.22 -5.22 15.16 2.25 0.03 -5.18 15 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 20 H 0.04 0.99 7.97 -51.93 -0.41 0.58 15 21 H 0.08 2.17 6.55 -51.93 -0.34 1.83 15 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.04 0.76 6.63 -51.93 -0.34 0.42 15 24 H 0.07 1.34 6.98 -51.93 -0.36 0.98 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.05 0.81 7.47 -51.93 -0.39 0.42 15 28 H 0.07 1.28 7.47 -51.93 -0.39 0.89 15 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 LS Contribution 225.63 15.07 3.40 3.40 Total: -1.00 -28.69 225.63 -6.40 -35.09 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.11 Total: -2.95 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.33 Total: -22.19 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.63 Total: -25.08 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.03 Total: -5.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.69 -6.40 -35.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.200 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds