Wall clock time and date at job start Mon Mar 30 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46463 * 111.00621 * 2 1 4 4 C 1.53248 * 109.86204 * 162.23470 * 3 2 1 5 5 S 1.81898 * 108.50412 * 62.00874 * 4 3 2 6 6 C 1.81895 * 101.91285 * 308.69191 * 5 4 3 7 7 C 1.46460 * 110.93769 * 233.81645 * 2 1 3 8 8 H 1.08997 * 109.23180 * 77.55693 * 7 2 1 9 9 C 1.50695 * 109.57708 * 317.79504 * 7 2 1 10 10 H 1.08003 * 120.00166 * 353.94430 * 9 7 2 11 11 C 1.37874 * 119.99912 * 173.94006 * 9 7 2 12 12 N 1.31514 * 120.00102 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 120.00029 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46890 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47026 * 119.99687 * 13 11 9 16 16 H 1.48502 * 109.47446 * 240.00265 * 13 11 9 17 17 H 1.09000 * 109.47120 * 67.99391 * 1 2 3 18 18 H 1.09000 * 109.47425 * 187.99996 * 1 2 3 19 19 H 1.09001 * 109.46938 * 307.99805 * 1 2 3 20 20 H 1.09007 * 109.40316 * 42.11574 * 3 2 1 21 21 H 1.08998 * 109.34474 * 282.31867 * 3 2 1 22 22 H 1.08997 * 109.63153 * 302.29936 * 4 3 2 23 23 H 1.09007 * 109.79198 * 181.81067 * 4 3 2 24 24 H 1.08998 * 109.63638 * 171.01553 * 6 5 4 25 25 H 1.09008 * 109.63476 * 291.40697 * 6 5 4 26 26 H 0.97008 * 119.99662 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9940 1.3673 0.0000 4 6 3.4620 1.3613 0.4398 5 16 4.4205 0.3878 -0.7612 6 6 3.4619 -1.1559 -0.8435 7 6 1.9924 -0.8076 -1.1041 8 1 1.9136 -0.2412 -2.0320 9 6 1.1905 -2.0777 -1.2249 10 1 0.4363 -2.3124 -0.4884 11 6 1.4197 -2.9402 -2.2759 12 7 2.3383 -2.6547 -3.1726 13 14 0.4252 -4.5144 -2.4262 14 1 -0.5377 -4.6010 -1.2990 15 1 -0.3178 -4.5097 -3.7120 16 1 1.3400 -5.6835 -2.3873 17 1 -0.3633 0.3851 -0.9528 18 1 -0.3634 -1.0176 0.1430 19 1 -0.3633 0.6327 0.8098 20 1 1.4118 1.9788 0.6895 21 1 1.9186 1.7830 -1.0048 22 1 3.5464 0.9095 1.4281 23 1 3.8424 2.3824 0.4703 24 1 3.8398 -1.7789 -1.6541 25 1 3.5491 -1.6921 0.1015 26 1 2.4998 -3.2618 -3.9118 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131043.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:04 Heat of formation + Delta-G solvation = -14.332912 kcal Electronic energy + Delta-G solvation = -10137.441922 eV Core-core repulsion = 8341.472349 eV Total energy + Delta-G solvation = -1795.969573 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04953 -35.02677 -32.12722 -31.26402 -27.40026 -25.79356 -23.86161 -21.44682 -18.61316 -17.48211 -16.74664 -16.09862 -15.79847 -14.99564 -14.76366 -14.49135 -14.14886 -13.16482 -12.97767 -12.95700 -12.77515 -12.50814 -12.25682 -12.13018 -11.94676 -11.12557 -10.68854 -10.36934 -9.07818 -8.59417 -8.19741 -6.34144 1.06392 1.40877 1.43195 1.54755 1.79393 2.38793 3.10640 3.23638 4.04851 4.29036 4.37066 4.54943 4.56155 4.69203 4.78161 4.83600 4.98202 5.08916 5.28609 5.50382 5.64923 5.95381 6.23120 6.63483 6.82374 7.36665 8.86843 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.052295 B = 0.014993 C = 0.012269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.295977 B = 1867.070332 C = 2281.668437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.565 5.565 3 C 0.055 3.945 4 C -0.053 4.053 5 S -0.357 6.357 6 C -0.028 4.028 7 C 0.227 3.773 8 H -0.026 1.026 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.013 3.987 12 N -0.919 5.919 13 Si 0.965 3.035 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.280 1.280 17 H 0.006 0.994 18 H 0.066 0.934 19 H 0.080 0.920 20 H 0.108 0.892 21 H 0.021 0.979 22 H 0.091 0.909 23 H 0.128 0.872 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 5.202 6.189 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.290 5.290 3 C -0.075 4.075 4 C -0.201 4.201 5 S -0.130 6.130 6 C -0.176 4.176 7 C 0.118 3.882 8 H -0.008 1.008 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.187 4.187 12 N -0.558 5.558 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.206 1.206 17 H 0.024 0.976 18 H 0.084 0.916 19 H 0.099 0.901 20 H 0.126 0.874 21 H 0.040 0.960 22 H 0.110 0.890 23 H 0.146 0.854 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.549 5.230 5.912 7.913 hybrid contribution -1.433 -0.928 -0.717 1.852 sum -1.983 4.301 5.196 7.031 Atomic orbital electron populations 1.22170 0.86482 1.02371 0.98947 1.61178 1.08930 1.11995 1.46916 1.22245 0.94965 0.90268 0.99985 1.23475 0.95741 1.02100 0.98779 1.86497 1.43682 1.21921 1.60911 1.23541 0.97769 0.93130 1.03185 1.19062 0.90476 0.92389 0.86248 1.00805 1.21596 1.20027 1.05177 1.09945 0.90766 1.25834 0.96253 1.01545 0.95044 1.70058 1.33496 1.38285 1.13929 0.85387 0.78591 0.78840 0.78143 1.18580 1.20736 1.20608 0.97552 0.91561 0.90116 0.87390 0.96020 0.88993 0.85407 0.89163 0.92160 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.79 8.94 127.69 1.14 2.93 15 2 N -0.57 -23.66 4.56 -902.75 -4.11 -27.77 15 3 C 0.05 1.88 5.43 86.47 0.47 2.35 15 4 C -0.05 -1.71 6.69 72.07 0.48 -1.23 15 5 S -0.36 -15.12 22.40 -56.49 -1.27 -16.39 15 6 C -0.03 -1.37 5.80 72.07 0.42 -0.95 15 7 C 0.23 11.55 1.78 44.34 0.08 11.63 15 8 H -0.03 -1.50 7.92 -2.39 -0.02 -1.52 15 9 C -0.53 -28.20 7.74 25.60 0.20 -28.00 15 10 H 0.07 3.85 5.73 -2.91 -0.02 3.83 15 11 C 0.01 0.72 5.32 84.65 0.45 1.17 15 12 N -0.92 -52.73 11.73 21.45 0.25 -52.48 15 13 Si 0.97 42.52 29.54 68.60 2.03 44.54 15 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 17 H 0.01 0.23 8.14 -2.39 -0.02 0.21 15 18 H 0.07 2.63 5.81 -2.39 -0.01 2.62 15 19 H 0.08 2.35 7.88 -2.39 -0.02 2.33 15 20 H 0.11 2.88 7.79 -2.38 -0.02 2.87 15 21 H 0.02 0.82 7.92 -2.39 -0.02 0.80 15 22 H 0.09 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.13 3.26 8.14 -2.38 -0.02 3.24 15 24 H 0.09 5.04 6.50 -2.39 -0.02 5.02 15 25 H 0.06 2.96 8.14 -2.38 -0.02 2.94 15 26 H 0.26 14.40 8.31 -92.70 -0.77 13.63 15 Total: -1.00 -60.00 221.67 1.29 -58.71 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.15 Total: 5.48 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.24 Total: -12.09 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -3.86 Total: -80.25 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -15.12 SS G_CDS: -1.27 Total: -16.39 kcal Total: -60.00 1.29 -58.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131043.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.376 kcal (2) G-P(sol) polarization free energy of solvation -59.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds