Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99725 * 2 1 4 4 H 1.48494 * 109.47451 * 269.99512 * 3 2 1 5 5 H 1.48502 * 109.47257 * 29.99792 * 3 2 1 6 6 H 1.48508 * 109.47147 * 149.99914 * 3 2 1 7 7 C 1.37875 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99950 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00112 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.22161 * 60.60121 * 9 7 2 11 11 C 1.49446 * 109.22774 * 180.02562 * 9 7 2 12 12 C 1.52399 * 105.29413 * 219.11205 * 11 9 7 13 13 S 1.74763 * 114.52902 * 269.47505 * 12 11 9 14 14 C 1.85011 * 101.65642 * 61.32156 * 13 12 11 15 15 C 1.50346 * 108.77876 * 292.81970 * 14 13 12 16 16 N 1.47444 * 109.24086 * 301.26468 * 9 7 2 17 17 H 0.97001 * 120.00512 * 0.02562 * 1 2 3 18 18 H 1.08997 * 110.27516 * 100.16453 * 11 9 7 19 19 H 1.09007 * 110.39527 * 338.11955 * 11 9 7 20 20 H 1.09000 * 108.47556 * 148.16781 * 12 11 9 21 21 H 1.09005 * 108.34667 * 30.68498 * 12 11 9 22 22 H 1.08994 * 109.58548 * 173.02556 * 14 13 12 23 23 H 1.09006 * 109.69964 * 52.67509 * 14 13 12 24 24 H 1.09002 * 107.95715 * 212.60444 * 15 14 13 25 25 H 1.09001 * 107.95657 * 328.88165 * 15 14 13 26 26 H 1.00901 * 111.02170 * 66.95306 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8700 -0.6885 0.8978 11 6 4.0038 -2.6050 0.0010 12 6 5.2128 -2.6091 0.9288 13 16 6.7376 -2.2947 0.1349 14 6 6.4625 -0.5957 -0.5435 15 6 5.4113 -0.6671 -1.6160 16 7 3.9979 -0.4717 -1.1888 17 1 -0.4851 0.8400 -0.0004 18 1 4.2989 -2.9020 -1.0053 19 1 3.2335 -3.2761 0.3813 20 1 5.2712 -3.5826 1.4157 21 1 5.0595 -1.8495 1.6954 22 1 7.3922 -0.2167 -0.9677 23 1 6.1271 0.0683 0.2533 24 1 5.6437 0.0896 -2.3653 25 1 5.4854 -1.6436 -2.0947 26 1 3.7690 0.5095 -1.1353 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187499.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -12.415962 kcal Electronic energy + Delta-G solvation = -10187.940646 eV Core-core repulsion = 8392.054198 eV Total energy + Delta-G solvation = -1795.886448 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.91178 -34.70676 -33.90751 -31.35251 -28.25564 -25.23593 -23.86881 -20.89817 -18.93202 -18.40103 -17.12024 -16.31513 -15.63744 -15.29977 -14.98836 -14.73478 -14.28215 -13.93819 -13.40849 -12.93832 -12.69581 -12.39990 -12.01513 -11.70703 -11.66285 -11.32521 -10.82873 -10.70313 -9.13903 -8.61009 -8.34147 -6.40080 0.85882 1.22458 1.28724 1.35824 1.53080 2.25529 2.84868 3.45775 3.86514 3.92641 4.01272 4.27677 4.36458 4.50111 4.68193 4.80070 4.86620 4.96010 5.09624 5.33641 5.55539 6.24274 6.42767 6.47703 6.75647 7.27271 8.82451 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.057981 B = 0.015243 C = 0.013307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.801274 B = 1836.515810 C = 2103.703179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.017 3.983 3 Si 0.947 3.053 4 H -0.255 1.255 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.512 4.512 8 H 0.040 0.960 9 C 0.198 3.802 10 H -0.009 1.009 11 C -0.093 4.093 12 C -0.114 4.114 13 S -0.245 6.245 14 C -0.096 4.096 15 C 0.056 3.944 16 N -0.725 5.725 17 H 0.267 0.733 18 H 0.078 0.922 19 H 0.068 0.932 20 H 0.112 0.888 21 H 0.070 0.930 22 H 0.138 0.862 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.797 0.414 -0.693 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.092 3.908 10 H 0.008 0.992 11 C -0.133 4.133 12 C -0.263 4.263 13 S -0.019 6.019 14 C -0.246 4.246 15 C -0.074 4.074 16 N -0.364 5.364 17 H 0.076 0.924 18 H 0.096 0.904 19 H 0.087 0.913 20 H 0.130 0.870 21 H 0.088 0.912 22 H 0.156 0.844 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.384 -0.660 -1.071 14.438 hybrid contribution -1.172 1.933 0.883 2.427 sum 13.212 1.274 -0.188 13.274 Atomic orbital electron populations 1.70044 1.08149 1.28143 1.52063 1.25928 0.95497 1.03152 0.93617 0.85835 0.78639 0.78923 0.79221 1.17996 1.22008 1.18280 1.21466 0.90798 0.93263 1.49563 0.94216 1.18998 0.93219 0.92169 0.86399 0.99202 1.21071 0.95716 0.97026 0.99448 1.22737 0.96336 1.06297 1.00946 1.85843 1.20679 1.23458 1.71875 1.24140 1.04608 0.94149 1.01700 1.22135 0.84697 1.04096 0.96429 1.59788 1.18673 1.14089 1.43820 0.92406 0.90375 0.91300 0.87019 0.91153 0.84377 0.91243 0.88932 0.90445 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.75 13.96 21.45 0.30 -58.45 15 2 C 0.02 0.96 5.47 84.65 0.46 1.42 15 3 Si 0.95 43.77 24.53 68.60 1.68 45.45 15 4 H -0.25 -11.02 7.03 99.48 0.70 -10.32 15 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 6 H -0.26 -11.09 6.54 99.48 0.65 -10.44 15 7 C -0.51 -29.27 9.22 25.60 0.24 -29.04 15 8 H 0.04 2.50 7.65 -2.91 -0.02 2.48 15 9 C 0.20 9.14 1.75 42.93 0.08 9.22 15 10 H -0.01 -0.44 5.85 -2.39 -0.01 -0.45 15 11 C -0.09 -3.68 5.29 29.26 0.15 -3.53 15 12 C -0.11 -3.78 5.49 71.78 0.39 -3.38 15 13 S -0.24 -7.17 21.74 -56.49 -1.23 -8.40 15 14 C -0.10 -2.63 6.29 71.12 0.45 -2.19 15 15 C 0.06 1.76 5.75 85.05 0.49 2.25 15 16 N -0.73 -30.49 6.08 -499.75 -3.04 -33.52 15 17 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 18 H 0.08 3.05 6.63 -2.39 -0.02 3.03 15 19 H 0.07 2.85 7.46 -2.38 -0.02 2.84 15 20 H 0.11 3.26 8.14 -4.39 -0.04 3.22 15 21 H 0.07 2.45 6.87 -4.39 -0.03 2.42 15 22 H 0.14 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 15 24 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 25 H 0.08 2.45 6.74 -2.39 -0.02 2.43 15 26 H 0.32 13.44 4.06 -89.69 -0.36 13.07 15 Total: -1.00 -63.38 212.39 0.69 -62.69 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.71 Total: 17.48 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 2.26 Total: -25.25 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -2.74 Total: -91.98 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.68 Total: 45.45 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.23 Total: -8.40 kcal Total: -63.38 0.69 -62.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187499.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.277 kcal (2) G-P(sol) polarization free energy of solvation -63.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds