Wall clock time and date at job start Mon Mar 30 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00268 * 2 1 4 4 H 1.48503 * 109.46980 * 269.99998 * 3 2 1 5 5 H 1.48496 * 109.47106 * 30.00097 * 3 2 1 6 6 H 1.48496 * 109.47152 * 150.00499 * 3 2 1 7 7 C 1.37881 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47192 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.62526 * 55.39243 * 10 9 7 12 12 C 1.53247 * 109.79192 * 175.88929 * 10 9 7 13 13 N 1.46470 * 109.85662 * 181.80486 * 12 10 9 14 14 C 1.46462 * 112.55941 * 287.33825 * 13 12 10 15 15 C 1.53256 * 109.85672 * 72.66031 * 14 13 12 16 16 S 1.81893 * 109.63147 * 294.99906 * 10 9 7 17 17 H 0.96996 * 119.99780 * 359.97438 * 1 2 3 18 18 H 1.09006 * 109.46661 * 59.99936 * 9 7 2 19 19 H 1.09000 * 109.47261 * 300.00555 * 9 7 2 20 20 H 1.09004 * 109.40294 * 301.92058 * 12 10 9 21 21 H 1.08998 * 109.40905 * 61.76731 * 12 10 9 22 22 H 1.00902 * 110.99856 * 162.23083 * 13 12 10 23 23 H 1.08994 * 109.40996 * 312.54356 * 14 13 12 24 24 H 1.08998 * 109.40618 * 192.77496 * 14 13 12 25 25 H 1.09001 * 109.62909 * 57.70445 * 15 14 13 26 26 H 1.09001 * 109.63061 * 178.29176 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9270 -3.5619 0.8427 12 6 1.4893 -4.9912 0.1015 13 7 2.4417 -6.1032 0.1437 14 6 3.0770 -6.3484 -1.1530 15 6 4.0865 -5.2359 -1.4566 16 16 3.1915 -3.6555 -1.5553 17 1 -0.4849 0.8400 0.0004 18 1 0.6240 -2.5567 -0.8904 19 1 0.6247 -2.5571 0.8896 20 1 0.8870 -4.9955 1.0100 21 1 0.8384 -5.1060 -0.7652 22 1 2.0037 -6.9412 0.4959 23 1 2.3148 -6.3682 -1.9318 24 1 3.5927 -7.3083 -1.1279 25 1 4.8287 -5.1874 -0.6598 26 1 4.5789 -5.4379 -2.4079 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354278.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:22 Heat of formation + Delta-G solvation = -11.909013 kcal Electronic energy + Delta-G solvation = -9728.325997 eV Core-core repulsion = 7932.461531 eV Total energy + Delta-G solvation = -1795.864465 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.04608 -33.72617 -31.54413 -29.37349 -26.38048 -23.25580 -21.22803 -20.45667 -16.59919 -16.26514 -15.50256 -14.66947 -14.39221 -13.58922 -13.30268 -12.92662 -12.25793 -12.01817 -11.82616 -11.27471 -10.85938 -10.63821 -10.54867 -10.03712 -9.47103 -9.22816 -8.86591 -8.38186 -8.30953 -6.87112 -5.98432 -3.99036 2.51780 3.36417 3.39908 3.42477 3.47181 4.29798 4.51246 5.15401 5.35446 5.39404 5.52858 5.57012 5.73906 5.82294 6.07505 6.14066 6.39917 6.71255 7.17884 7.45697 7.53418 7.66542 7.99560 8.38439 9.05826 9.64388 11.13200 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.069766 B = 0.011115 C = 0.010066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.242477 B = 2518.479944 C = 2781.085706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.039 3.961 10 C -0.026 4.026 11 H 0.082 0.918 12 C 0.060 3.940 13 N -0.704 5.704 14 C 0.062 3.938 15 C -0.100 4.100 16 S -0.247 6.247 17 H 0.260 0.740 18 H 0.026 0.974 19 H 0.032 0.968 20 H 0.080 0.920 21 H 0.041 0.959 22 H 0.343 0.657 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -10.881 -1.089 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.155 4.155 11 H 0.100 0.900 12 C -0.071 4.071 13 N -0.336 5.336 14 C -0.069 4.069 15 C -0.249 4.249 16 S -0.020 6.020 17 H 0.070 0.930 18 H 0.044 0.956 19 H 0.050 0.950 20 H 0.098 0.902 21 H 0.060 0.940 22 H 0.161 0.839 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.638 -9.590 -1.698 10.787 hybrid contribution -0.294 -0.367 0.471 0.665 sum 4.344 -9.957 -1.227 10.933 Atomic orbital electron populations 1.69957 1.06069 1.26656 1.51055 1.24987 0.94815 0.99277 0.95269 0.86554 0.79852 0.83260 0.78164 1.20623 1.21350 1.19778 1.21203 0.93388 0.90332 1.50167 0.91892 1.19024 0.92910 0.89996 0.98052 1.23506 0.99863 0.97438 0.94665 0.89992 1.22279 0.92996 0.90364 1.01415 1.59553 1.37211 1.09601 1.27214 1.21994 0.96722 0.97701 0.90460 1.23509 1.00263 0.96731 1.04393 1.87342 1.57487 1.24850 1.32311 0.93016 0.95585 0.95027 0.90153 0.94038 0.83943 0.94105 0.90940 0.90025 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 15 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.51 -14.63 8.54 -34.44 -0.29 -14.92 15 8 H 0.06 1.80 7.61 -52.48 -0.40 1.40 15 9 C 0.04 1.00 4.48 -27.88 -0.12 0.87 15 10 C -0.03 -0.55 2.71 -26.60 -0.07 -0.62 15 11 H 0.08 1.83 8.14 -51.93 -0.42 1.40 15 12 C 0.06 1.05 5.69 -3.93 -0.02 1.02 15 13 N -0.70 -10.33 6.58 -114.14 -0.75 -11.08 15 14 C 0.06 0.85 6.39 -3.93 -0.03 0.82 15 15 C -0.10 -1.55 6.69 37.29 0.25 -1.30 15 16 S -0.25 -5.12 21.10 -107.50 -2.27 -7.39 15 17 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 18 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 20 H 0.08 1.32 8.14 -51.93 -0.42 0.89 15 21 H 0.04 0.74 7.91 -51.93 -0.41 0.33 15 22 H 0.34 4.03 8.89 -39.29 -0.35 3.68 15 23 H 0.04 0.58 7.91 -51.93 -0.41 0.16 15 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 LS Contribution 229.41 15.07 3.46 3.46 Total: -1.00 -30.48 229.41 -7.90 -38.38 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.66 Total: -1.65 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.39 Total: -12.55 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.01 Total: -37.42 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.27 Total: -7.39 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.48 -7.90 -38.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354278.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.468 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds