Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86790 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47261 * 270.00164 * 3 2 1 5 5 H 1.48507 * 109.47255 * 29.99990 * 3 2 1 6 6 H 1.48500 * 109.47795 * 150.00438 * 3 2 1 7 7 C 1.38993 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00177 * 179.97438 * 7 2 1 9 9 N 1.37404 * 119.99538 * 359.97438 * 7 2 1 10 10 N 1.40097 * 126.12245 * 0.03441 * 9 7 2 11 11 C 1.30935 * 108.26261 * 179.97438 * 10 9 7 12 12 C 1.40130 * 108.40806 * 0.24411 * 11 10 9 13 13 C 1.35249 * 107.98097 * 359.59390 * 12 11 10 14 14 C 1.50694 * 126.20759 * 180.18303 * 13 12 11 15 15 F 1.39896 * 109.47585 * 120.25311 * 14 13 12 16 16 F 1.39904 * 109.47326 * 240.25587 * 14 13 12 17 17 H 0.97002 * 119.99734 * 359.97438 * 1 2 3 18 18 H 1.08002 * 125.79225 * 179.97438 * 11 10 9 19 19 H 1.07997 * 126.01017 * 179.75838 * 12 11 10 20 20 H 1.09006 * 109.47163 * 0.24958 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.4944 2.0463 -1.4001 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4401 0.6999 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3207 -2.3936 -0.0005 10 7 -0.0723 -2.5429 -0.0007 11 6 -0.3477 -3.8230 -0.0012 12 6 0.8590 -4.5353 0.0043 13 6 1.8725 -3.6397 -0.0010 14 6 3.3447 -3.9615 -0.0018 15 9 3.9406 -3.4167 -1.1443 16 9 3.9417 -3.4169 1.1403 17 1 -0.4850 0.8401 0.0004 18 1 -1.3371 -4.2562 -0.0011 19 1 0.9617 -5.6104 0.0090 20 1 3.4803 -5.0431 -0.0019 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440684.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = -49.372814 kcal Electronic energy + Delta-G solvation = -11516.967639 eV Core-core repulsion = 8964.379229 eV Total energy + Delta-G solvation = -2552.588410 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.81782 -47.84130 -41.39240 -35.57941 -32.62976 -31.53146 -27.16515 -26.51096 -22.39993 -21.36117 -19.53861 -18.11236 -18.02194 -17.76803 -16.48966 -15.78799 -15.30184 -14.67841 -14.54998 -14.40007 -14.25086 -13.52951 -13.34830 -12.93599 -12.74196 -12.20007 -12.09941 -11.40624 -10.74413 -10.22826 -9.39602 -8.59057 -6.39468 1.13189 1.33547 1.50965 1.60139 2.06260 2.29252 2.60948 2.94816 3.03660 3.47849 3.99662 4.23941 4.41769 4.88102 5.08264 5.16696 5.44528 5.82199 6.22504 6.65499 7.28802 7.56632 8.39876 Molecular weight = 188.05amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.018624 C = 0.013587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.627737 B = 1503.111621 C = 2060.247674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C -0.001 4.001 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.349 4.349 8 H 0.120 0.880 9 N -0.152 5.152 10 N -0.313 5.313 11 C -0.061 4.061 12 C -0.267 4.267 13 C -0.140 4.140 14 C 0.354 3.646 15 F -0.215 7.215 16 F -0.215 7.215 17 H 0.281 0.719 18 H 0.187 0.813 19 H 0.169 0.831 20 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -4.199 0.008 6.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.214 4.214 3 Si 0.831 3.169 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.482 4.482 8 H 0.138 0.862 9 N 0.080 4.920 10 N -0.145 5.145 11 C -0.234 4.234 12 C -0.299 4.299 13 C -0.269 4.269 14 C 0.299 3.701 15 F -0.197 7.197 16 F -0.197 7.197 17 H 0.091 0.909 18 H 0.204 0.796 19 H 0.186 0.814 20 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.745 -2.853 0.013 5.537 hybrid contribution 0.351 -0.037 -0.009 0.353 sum 5.095 -2.890 0.004 5.858 Atomic orbital electron populations 1.70332 1.08030 1.29485 1.36091 1.26809 0.96633 1.04051 0.93942 0.84686 0.78313 0.74254 0.79628 1.18444 1.18923 1.17599 1.20460 0.92396 0.81667 1.53650 0.86206 1.45183 1.03965 1.04308 1.38577 1.78141 0.90614 1.18087 1.27628 1.24155 1.00000 0.91725 1.07471 1.20961 0.90002 0.99795 1.19145 1.21952 0.96257 0.87373 1.21329 1.20196 0.82026 0.97652 0.70177 1.92943 1.85197 1.89294 1.52226 1.92946 1.85158 1.89304 1.52276 0.90895 0.79583 0.81379 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.60 11.82 21.66 0.26 -46.34 14 2 C 0.00 -0.08 5.50 84.96 0.47 0.39 14 3 Si 1.01 40.34 29.55 68.60 2.03 42.37 14 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 14 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 14 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 14 7 C -0.35 -19.77 9.93 84.00 0.83 -18.93 14 8 H 0.12 6.44 7.26 -2.91 -0.02 6.42 14 9 N -0.15 -8.68 3.74 -178.69 -0.67 -9.34 14 10 N -0.31 -18.20 10.42 -56.80 -0.59 -18.79 14 11 C -0.06 -2.94 12.02 85.29 1.03 -1.91 14 12 C -0.27 -11.47 10.70 22.04 0.24 -11.23 14 13 C -0.14 -6.65 6.36 41.18 0.26 -6.39 14 14 C 0.35 13.43 5.20 71.23 0.37 13.80 14 15 F -0.22 -8.78 17.12 44.97 0.77 -8.01 14 16 F -0.22 -8.81 17.12 44.97 0.77 -8.04 14 17 H 0.28 14.64 8.31 -92.71 -0.77 13.87 14 18 H 0.19 7.36 8.06 -2.91 -0.02 7.34 14 19 H 0.17 5.46 8.06 -2.91 -0.02 5.43 14 20 H 0.18 4.54 8.11 -2.38 -0.02 4.52 14 Total: -1.00 -69.25 200.58 7.02 -62.23 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.26 Total: 10.21 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.19 Total: -24.27 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.00 Total: -74.47 kcal Atomic # 9 Polarization: -17.60 SS G_CDS: 1.54 Total: -16.06 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.25 7.02 -62.23 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440684.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.853 kcal (2) G-P(sol) polarization free energy of solvation -69.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds