Wall clock time and date at job start Mon Mar 30 2020 02:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.40850 * 305.15723 * 10 9 7 12 12 C 1.53248 * 109.41105 * 185.39455 * 10 9 7 13 13 S 1.81897 * 108.50812 * 177.87723 * 12 10 9 14 14 C 1.81897 * 101.91421 * 51.30573 * 13 12 10 15 15 C 1.53245 * 108.50716 * 308.69583 * 14 13 12 16 16 N 1.46464 * 109.86254 * 62.00071 * 15 14 13 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.09001 * 109.63006 * 297.58862 * 12 10 9 21 21 H 1.09001 * 109.62874 * 58.17270 * 12 10 9 22 22 H 1.08999 * 109.63265 * 188.98452 * 14 13 12 23 23 H 1.09005 * 109.62894 * 68.39891 * 14 13 12 24 24 H 1.08999 * 109.40562 * 301.88629 * 15 14 13 25 25 H 1.08994 * 109.41133 * 182.12332 * 15 14 13 26 26 H 1.00898 * 111.00101 * 52.45189 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9304 -3.5528 -0.8400 12 6 1.4822 -4.9843 -0.1354 13 16 2.6893 -6.3437 -0.1963 14 6 3.7150 -6.0010 1.2663 15 6 4.1705 -4.5389 1.2093 16 7 3.0052 -3.6527 1.2526 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 0.8240 -5.1172 0.7232 21 1 0.8943 -4.9752 -1.0532 22 1 4.5860 -6.6563 1.2645 23 1 3.1300 -6.1673 2.1709 24 1 4.7219 -4.3672 0.2848 25 1 4.8179 -4.3278 2.0603 26 1 2.4114 -3.8742 2.0376 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469089.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:11 Heat of formation + Delta-G solvation = -11.321449 kcal Electronic energy + Delta-G solvation = -9801.408233 eV Core-core repulsion = 8005.569246 eV Total energy + Delta-G solvation = -1795.838987 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.39674 -33.21972 -31.56993 -27.95155 -27.44397 -23.32060 -22.15129 -20.13132 -16.77887 -15.93857 -14.91482 -14.48354 -14.25578 -14.08301 -13.55382 -13.15500 -12.22309 -12.11868 -11.51003 -11.38149 -10.96243 -10.70592 -10.38917 -10.26766 -9.91370 -9.26350 -9.07603 -8.31908 -8.09978 -7.28050 -5.93632 -3.92200 1.98230 2.74208 3.36367 3.43793 3.49445 4.52883 4.64415 4.99820 5.24138 5.34149 5.44337 5.53220 5.59597 5.82326 5.97019 6.11718 6.36975 6.76025 7.42564 7.57529 7.84520 7.93669 8.06999 8.49890 9.13582 9.70023 11.18309 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.072880 B = 0.010187 C = 0.009342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.099288 B = 2748.037919 C = 2996.581351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.050 3.950 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.097 3.903 11 H 0.081 0.919 12 C -0.105 4.105 13 S -0.301 6.301 14 C -0.116 4.116 15 C 0.059 3.941 16 N -0.667 5.667 17 H 0.258 0.742 18 H 0.018 0.982 19 H 0.023 0.977 20 H 0.078 0.922 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -9.375 2.153 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.149 4.149 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.014 4.014 11 H 0.099 0.901 12 C -0.255 4.255 13 S -0.074 6.074 14 C -0.267 4.267 15 C -0.073 4.073 16 N -0.296 5.296 17 H 0.067 0.933 18 H 0.036 0.964 19 H 0.041 0.959 20 H 0.097 0.903 21 H 0.124 0.876 22 H 0.119 0.881 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.629 -9.571 1.227 11.171 hybrid contribution -0.230 0.880 0.975 1.333 sum 5.399 -8.691 2.202 10.466 Atomic orbital electron populations 1.69971 1.06029 1.26312 1.52072 1.25017 0.94810 0.99222 0.95881 0.86521 0.80186 0.83878 0.77306 1.19754 1.21321 1.21257 1.21152 0.93350 0.90014 1.48539 0.92004 1.19155 0.92952 0.91017 0.97348 1.22026 0.95714 0.92103 0.91588 0.90085 1.24527 0.98544 0.96356 1.06086 1.86714 1.39279 1.42169 1.39287 1.24268 1.01608 1.03356 0.97463 1.22238 0.94923 0.86849 1.03301 1.59894 1.10874 1.53385 1.05412 0.93266 0.96418 0.95927 0.90313 0.87595 0.88141 0.90320 0.90128 0.90287 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 15 2 C 0.05 1.44 5.46 -17.82 -0.10 1.34 15 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 7 C -0.49 -13.66 8.83 -34.44 -0.30 -13.97 15 8 H 0.06 1.72 7.74 -52.49 -0.41 1.32 15 9 C 0.03 0.85 4.65 -27.88 -0.13 0.72 15 10 C 0.10 1.93 2.23 -67.82 -0.15 1.78 15 11 H 0.08 1.71 7.91 -51.93 -0.41 1.29 15 12 C -0.11 -1.80 5.87 37.29 0.22 -1.58 15 13 S -0.30 -4.76 22.40 -107.50 -2.41 -7.17 15 14 C -0.12 -1.54 6.59 37.28 0.25 -1.29 15 15 C 0.06 0.86 6.42 -3.93 -0.03 0.84 15 16 N -0.67 -12.16 6.01 -107.08 -0.64 -12.80 15 17 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 18 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 19 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.08 1.31 8.14 -51.93 -0.42 0.88 15 21 H 0.11 1.80 8.14 -51.93 -0.42 1.37 15 22 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.08 1.25 7.91 -51.93 -0.41 0.83 15 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.34 5.83 8.65 -39.29 -0.34 5.49 15 LS Contribution 230.11 15.07 3.47 3.47 Total: -1.00 -29.39 230.11 -7.77 -37.16 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.66 Total: 0.88 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.24 Total: -12.17 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.09 Total: -39.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.41 Total: -7.17 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.39 -7.77 -37.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469089.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.841 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds