Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99875 * 2 1 4 4 H 1.48498 * 109.47035 * 240.00221 * 3 2 1 5 5 H 1.48501 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46903 * 120.00241 * 3 2 1 7 7 C 1.37880 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99894 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.51182 * 299.91896 * 9 7 2 11 11 C 1.53100 * 109.51014 * 179.78356 * 9 7 2 12 12 O 1.43010 * 109.26176 * 183.21937 * 11 9 7 13 13 C 1.43012 * 113.73881 * 58.66907 * 12 11 9 14 14 H 1.08996 * 109.51037 * 61.31271 * 13 12 11 15 15 C 1.53002 * 109.50648 * 181.39545 * 13 12 11 16 16 O 1.42898 * 109.47142 * 295.00241 * 15 13 12 17 17 C 1.53097 * 109.26122 * 301.32763 * 13 12 11 18 18 N 1.47019 * 109.50609 * 60.00174 * 9 7 2 19 19 H 0.96995 * 120.00295 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.50411 * 303.15527 * 11 9 7 21 21 H 1.08997 * 109.50229 * 63.23729 * 11 9 7 22 22 H 1.09005 * 109.47218 * 55.00066 * 15 13 12 23 23 H 1.08999 * 109.47581 * 175.00143 * 15 13 12 24 24 H 0.96701 * 114.00529 * 179.97438 * 16 15 13 25 25 H 1.08998 * 109.50868 * 296.91914 * 17 13 12 26 26 H 1.08993 * 109.50841 * 176.78469 * 17 13 12 27 27 H 1.00901 * 110.99924 * 302.32376 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6257 -2.5584 0.8902 11 6 2.2453 -3.6634 -0.0066 12 8 1.5263 -4.8973 -0.0824 13 6 0.6926 -5.0078 -1.2392 14 1 1.3080 -4.9578 -2.1375 15 6 -0.0541 -6.3427 -1.2052 16 8 0.8835 -7.4158 -1.3115 17 6 -0.3173 -3.8572 -1.2456 18 7 0.4052 -2.5776 -1.2004 19 1 -0.4850 0.8400 0.0004 20 1 2.9058 -3.5735 -0.8691 21 1 2.8368 -3.6417 0.9086 22 1 -0.6007 -6.4296 -0.2662 23 1 -0.7547 -6.3886 -2.0390 24 1 0.4795 -8.2943 -1.2964 25 1 -0.9677 -3.9389 -0.3747 26 1 -0.9172 -3.9045 -2.1544 27 1 -0.2352 -1.7990 -1.2428 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260985927.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = -97.704415 kcal Electronic energy + Delta-G solvation = -11942.414293 eV Core-core repulsion = 9700.076589 eV Total energy + Delta-G solvation = -2242.337704 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.60981 -36.30029 -34.03189 -32.26447 -30.74273 -27.37622 -24.63329 -23.65754 -21.36668 -19.36390 -17.08150 -16.68787 -15.89369 -15.24210 -14.55985 -14.08796 -13.56009 -13.48116 -13.08006 -12.69997 -12.25438 -11.95331 -11.05098 -10.92280 -10.85232 -10.42206 -10.08460 -9.91625 -9.57262 -9.29982 -8.67454 -8.56091 -7.00264 -6.15189 -4.19227 3.29337 3.33373 3.36707 4.33328 4.40452 4.51532 5.10335 5.39729 5.52537 5.77297 5.82874 5.86546 6.08550 6.26276 6.48371 6.53529 6.58644 6.77269 7.36751 7.77620 7.79967 7.88757 8.19719 8.53095 8.89721 8.97006 9.48767 10.95440 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.093856 B = 0.010048 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.258906 B = 2785.898552 C = 2980.353321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.182 3.818 10 H 0.004 0.996 11 C 0.070 3.930 12 O -0.391 6.391 13 C 0.097 3.903 14 H 0.063 0.937 15 C 0.085 3.915 16 O -0.566 6.566 17 C 0.027 3.973 18 N -0.681 5.681 19 H 0.266 0.734 20 H 0.045 0.955 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.372 0.628 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -8.138 -2.225 8.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.074 3.926 10 H 0.022 0.978 11 C -0.006 4.006 12 O -0.310 6.310 13 C 0.039 3.961 14 H 0.081 0.919 15 C 0.007 3.993 16 O -0.370 6.370 17 C -0.104 4.104 18 N -0.319 5.319 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.101 0.899 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.217 0.783 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.870 -7.843 -2.510 8.281 hybrid contribution -0.809 0.865 0.503 1.287 sum -1.679 -6.978 -2.007 7.452 Atomic orbital electron populations 1.69655 1.06140 1.27309 1.51050 1.25005 0.94935 0.99495 0.93987 0.86480 0.79457 0.82277 0.78712 1.20040 1.21277 1.20197 1.21012 0.93140 0.89858 1.50631 0.91940 1.19660 0.91438 0.93216 0.88252 0.97795 1.22853 0.94347 0.82847 1.00567 1.87875 1.60654 1.39045 1.43431 1.21985 0.92238 0.91925 0.89979 0.91941 1.22208 0.90793 0.86498 0.99823 1.86579 1.36617 1.16664 1.97134 1.22381 0.95202 0.93305 0.99532 1.61051 1.26047 1.02114 1.42689 0.92462 0.93681 0.89901 0.93172 0.92598 0.78256 0.95932 0.91807 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.49 55.43 0.64 -24.71 15 2 C 0.07 1.85 5.35 -17.82 -0.10 1.76 15 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.51 -14.09 8.77 -34.44 -0.30 -14.39 15 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 15 9 C 0.18 4.79 2.59 -68.75 -0.18 4.61 15 10 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 15 11 C 0.07 1.65 6.23 37.21 0.23 1.88 15 12 O -0.39 -8.87 10.43 -39.96 -0.42 -9.28 15 13 C 0.10 1.93 3.09 -26.68 -0.08 1.85 15 14 H 0.06 1.29 8.14 -51.93 -0.42 0.86 15 15 C 0.08 1.31 6.71 37.16 0.25 1.56 15 16 O -0.57 -8.61 13.63 -39.96 -0.54 -9.15 15 17 C 0.03 0.55 6.05 -3.71 -0.02 0.53 15 18 N -0.68 -16.95 6.54 -107.67 -0.70 -17.66 15 19 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 20 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.08 1.82 8.14 -51.93 -0.42 1.40 15 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.37 3.44 9.12 45.56 0.42 3.85 15 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 15 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 27 H 0.37 9.70 6.74 -39.29 -0.26 9.43 15 LS Contribution 228.78 15.07 3.45 3.45 Total: -1.00 -30.79 228.78 -5.57 -36.36 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.77 Total: 7.06 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.20 Total: -2.20 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.07 Total: -42.37 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.96 Total: -18.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.79 -5.57 -36.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985927.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.344 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds