Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86811 * 119.99842 * 2 1 4 4 H 1.48502 * 109.46760 * 240.00119 * 3 2 1 5 5 H 1.48494 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47276 * 119.99976 * 3 2 1 7 7 C 1.37874 * 120.00675 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00809 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99482 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47056 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00310 * 180.02562 * 11 10 9 13 13 C 1.53042 * 113.15239 * 205.00503 * 12 11 10 14 14 S 1.81425 * 89.93235 * 211.83017 * 13 12 11 15 15 C 1.53039 * 113.15200 * 104.62654 * 12 11 10 16 16 H 0.97003 * 120.00058 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47094 * 60.00073 * 9 7 2 18 18 H 1.09005 * 109.47030 * 299.99607 * 9 7 2 19 19 H 1.08998 * 109.46922 * 60.00198 * 10 9 7 20 20 H 1.08998 * 109.47175 * 300.00205 * 10 9 7 21 21 H 1.00904 * 110.99737 * 56.04413 * 11 10 9 22 22 H 1.09002 * 112.52154 * 334.81200 * 12 11 10 23 23 H 1.09002 * 113.14805 * 327.10968 * 13 12 11 24 24 H 1.09003 * 113.15177 * 96.55411 * 13 12 11 25 25 H 1.08997 * 113.14758 * 263.40700 * 15 12 11 26 26 H 1.08997 * 113.15183 * 32.85352 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 1.8231 -7.3463 -0.5924 14 16 2.8283 -8.3543 0.5323 15 6 2.5379 -6.7663 1.3637 16 1 -0.4850 0.8401 0.0004 17 1 0.6248 -2.5571 -0.8897 18 1 0.6241 -2.5567 0.8904 19 1 2.8720 -3.6042 0.8905 20 1 2.8721 -3.6042 -0.8894 21 1 0.8742 -4.9845 -0.7800 22 1 3.4063 -5.8271 -0.4268 23 1 0.7528 -7.4340 -0.4056 24 1 2.0766 -7.4938 -1.6422 25 1 3.3907 -6.4284 1.9524 26 1 1.6056 -6.7417 1.9279 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024336.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = 9.699857 kcal Electronic energy + Delta-G solvation = -9375.620954 eV Core-core repulsion = 7580.693520 eV Total energy + Delta-G solvation = -1794.927434 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.57354 -33.94050 -32.10579 -28.48797 -26.26489 -24.10871 -20.85811 -20.57955 -16.73936 -16.19758 -15.65970 -15.06369 -14.43593 -13.87756 -13.13301 -12.86919 -12.54786 -12.17305 -11.84001 -11.18604 -10.95093 -10.75946 -10.69969 -10.33517 -10.08870 -9.39658 -9.19379 -8.39446 -8.06963 -7.81837 -6.03127 -4.06181 1.79517 1.96168 3.31590 3.36233 3.38366 4.38079 4.39727 4.58323 4.95591 5.19712 5.32970 5.40351 5.41536 5.67574 5.89065 6.21776 6.32581 6.89219 7.31370 7.63493 7.70647 7.84333 8.01596 8.38140 9.00660 9.57962 11.08176 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.118337 B = 0.006628 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 236.555956 B = 4223.467989 C = 4328.439863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.063 3.937 11 N -0.675 5.675 12 C 0.080 3.920 13 C -0.083 4.083 14 S -0.316 6.316 15 C -0.062 4.062 16 H 0.262 0.738 17 H 0.014 0.986 18 H 0.026 0.974 19 H 0.061 0.939 20 H 0.020 0.980 21 H 0.343 0.657 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -11.123 -0.590 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.065 4.065 11 N -0.308 5.308 12 C -0.032 4.032 13 C -0.232 4.232 14 S -0.091 6.091 15 C -0.212 4.212 16 H 0.071 0.929 17 H 0.033 0.967 18 H 0.044 0.956 19 H 0.079 0.921 20 H 0.038 0.962 21 H 0.163 0.837 22 H 0.106 0.894 23 H 0.129 0.871 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.856 -12.301 0.234 12.893 hybrid contribution 0.254 1.898 -0.970 2.147 sum 4.110 -10.403 -0.736 11.210 Atomic orbital electron populations 1.69954 1.06044 1.26788 1.50420 1.24997 0.94845 0.99239 0.95210 0.86641 0.79570 0.83063 0.78623 1.20266 1.21249 1.20198 1.21123 0.92968 0.90970 1.51220 0.92758 1.19077 0.93994 0.90376 0.97818 1.22271 0.97124 0.88129 0.98967 1.60741 1.18839 1.01698 1.49525 1.22917 0.96879 0.90321 0.93127 1.24655 1.02456 0.94115 1.02007 1.88852 1.68468 1.26514 1.25301 1.24608 1.05782 0.89489 1.01280 0.92876 0.96720 0.95559 0.92088 0.96172 0.83683 0.89376 0.87122 0.88887 0.89009 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 15 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.02 0.63 5.23 -27.88 -0.15 0.48 15 10 C 0.06 1.26 5.47 -3.82 -0.02 1.24 15 11 N -0.68 -10.99 6.52 -117.63 -0.77 -11.76 15 12 C 0.08 1.08 3.80 -67.67 -0.26 0.82 15 13 C -0.08 -0.97 7.51 37.18 0.28 -0.70 15 14 S -0.32 -4.19 24.80 -107.50 -2.67 -6.86 15 15 C -0.06 -0.81 7.76 37.18 0.29 -0.52 15 16 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 17 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 18 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 20 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 15 21 H 0.34 5.27 8.52 -39.29 -0.33 4.94 15 22 H 0.09 1.21 7.86 -51.93 -0.41 0.80 15 23 H 0.11 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.11 1.45 8.14 -51.93 -0.42 1.03 15 LS Contribution 237.37 15.07 3.58 3.58 Total: -1.00 -29.10 237.37 -8.07 -37.17 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.67 Total: -0.69 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.27 Total: -12.01 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.03 Total: -37.57 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.67 Total: -6.86 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.10 -8.07 -37.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024336.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.872 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds