Wall clock time and date at job start Mon Mar 30 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00364 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00116 * 3 2 1 6 6 H 1.48502 * 109.47002 * 150.00019 * 3 2 1 7 7 C 1.38636 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00310 * 0.02562 * 7 2 1 9 9 O 1.34929 * 119.99824 * 179.72261 * 7 2 1 10 10 C 1.42905 * 116.99984 * 180.27471 * 9 7 2 11 11 H 1.09001 * 109.39070 * 330.20189 * 10 9 7 12 12 C 1.52578 * 109.38974 * 210.49716 * 10 9 7 13 13 C 1.52586 * 110.72262 * 169.17931 * 12 10 9 14 14 C 1.53095 * 109.95760 * 70.67592 * 13 12 10 15 15 S 1.81742 * 108.84066 * 296.97218 * 14 13 12 16 16 C 1.53096 * 109.38844 * 90.00401 * 10 9 7 17 17 H 0.96995 * 120.00173 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.22750 * 289.49531 * 12 10 9 19 19 H 1.08999 * 109.22798 * 48.85549 * 12 10 9 20 20 H 1.09002 * 109.39227 * 310.52163 * 13 12 10 21 21 H 1.09002 * 109.30637 * 190.77251 * 13 12 10 22 22 H 1.09004 * 109.57489 * 177.16473 * 14 13 12 23 23 H 1.08991 * 109.68315 * 56.84777 * 14 13 12 24 24 H 1.09009 * 109.57495 * 302.98084 * 16 10 9 25 25 H 1.08996 * 109.58096 * 63.23572 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 1.4691 -2.1360 -0.0014 9 8 3.3583 -1.2006 -0.0062 10 6 4.0071 -2.4738 -0.0125 11 1 3.3786 -3.2028 0.4990 12 6 5.3451 -2.3642 0.7126 13 6 5.9404 -3.7473 0.9594 14 6 6.4104 -4.3575 -0.3637 15 16 4.9711 -4.5829 -1.4502 16 6 4.2319 -2.9225 -1.4589 17 1 -0.4850 0.8400 0.0004 18 1 6.0357 -1.7794 0.1051 19 1 5.1953 -1.8621 1.6684 20 1 5.1842 -4.3922 1.4070 21 1 6.7884 -3.6587 1.6385 22 1 6.8798 -5.3229 -0.1743 23 1 7.1277 -3.6902 -0.8414 24 1 3.2776 -2.9503 -1.9851 25 1 4.9038 -2.2242 -1.9577 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102622.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:29 Heat of formation + Delta-G solvation = -49.851224 kcal Electronic energy + Delta-G solvation = -9946.996600 eV Core-core repulsion = 8051.768175 eV Total energy + Delta-G solvation = -1895.228425 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.66106 -34.86797 -31.92572 -30.02338 -26.94488 -24.53416 -22.08246 -20.24876 -17.68242 -16.65292 -15.35260 -14.87142 -14.34193 -13.81100 -13.45187 -13.04116 -12.93673 -12.22630 -11.99809 -11.35133 -11.08764 -11.02540 -10.77407 -10.37853 -10.19878 -9.86308 -9.49100 -9.15959 -8.25075 -7.42939 -6.03008 -3.71392 2.04904 2.79299 3.39245 3.42550 3.57917 4.52694 4.77616 4.90875 5.11760 5.23687 5.38349 5.47688 5.60560 5.69241 5.82801 6.00403 6.08599 6.21596 6.36560 6.60553 6.64277 7.88373 8.32630 9.36447 9.88327 11.09503 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.065929 B = 0.011255 C = 0.010476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.594601 B = 2487.100092 C = 2672.154817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.045 3.955 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.361 4.361 8 H 0.081 0.919 9 O -0.320 6.320 10 C 0.111 3.889 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.080 4.080 15 S -0.284 6.284 16 C -0.092 4.092 17 H 0.270 0.730 18 H 0.063 0.937 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.943 -5.939 0.258 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.152 4.152 3 Si 0.733 3.267 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.439 4.439 8 H 0.099 0.901 9 O -0.235 6.235 10 C 0.050 3.950 11 H 0.079 0.921 12 C -0.166 4.166 13 C -0.155 4.155 14 C -0.228 4.228 15 S -0.059 6.059 16 C -0.241 4.241 17 H 0.079 0.921 18 H 0.082 0.918 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.090 0.910 22 H 0.117 0.883 23 H 0.099 0.901 24 H 0.127 0.873 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.590 -6.584 -0.282 13.333 hybrid contribution 0.546 1.663 0.446 1.807 sum 12.136 -4.921 0.165 13.097 Atomic orbital electron populations 1.69685 1.05335 1.27253 1.53326 1.24319 0.94848 0.98204 0.97861 0.86178 0.79958 0.82348 0.78184 1.20748 1.21677 1.18986 1.20471 0.78308 0.95193 1.49935 0.90127 1.85297 1.20691 1.24544 1.92996 1.21822 0.93178 0.88472 0.91547 0.92131 1.21592 0.96583 0.96393 1.02029 1.21711 1.01049 0.96882 0.95872 1.23416 0.97376 1.04496 0.97547 1.86677 1.33657 1.20590 1.64936 1.24219 1.03865 0.92810 1.03175 0.92059 0.91817 0.90398 0.90554 0.90961 0.88265 0.90134 0.87296 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.96 55.48 0.77 -27.37 15 2 C 0.05 1.34 5.49 -17.51 -0.10 1.24 15 3 Si 0.91 23.04 28.62 -169.99 -4.86 18.17 15 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.36 -10.49 10.23 30.88 0.32 -10.18 15 8 H 0.08 2.46 7.87 -52.49 -0.41 2.05 15 9 O -0.32 -8.24 8.24 -16.51 -0.14 -8.37 15 10 C 0.11 2.26 2.50 -26.90 -0.07 2.20 15 11 H 0.06 1.30 7.70 -51.93 -0.40 0.90 15 12 C -0.13 -2.12 5.25 -27.16 -0.14 -2.26 15 13 C -0.12 -1.51 5.75 -26.89 -0.15 -1.67 15 14 C -0.08 -1.01 6.45 37.21 0.24 -0.77 15 15 S -0.28 -4.56 22.33 -107.50 -2.40 -6.96 15 16 C -0.09 -1.72 6.07 37.21 0.23 -1.50 15 17 H 0.27 7.79 8.31 -40.82 -0.34 7.45 15 18 H 0.06 1.01 8.08 -51.93 -0.42 0.59 15 19 H 0.08 1.32 8.14 -51.93 -0.42 0.89 15 20 H 0.08 1.03 8.05 -51.93 -0.42 0.61 15 21 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.10 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.11 2.21 8.14 -51.92 -0.42 1.78 15 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 225.10 15.07 3.39 3.39 Total: -1.00 -30.78 225.10 -6.24 -37.02 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.32 Total: -2.94 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 0.32 Total: -12.93 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.14 Total: -8.37 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.86 Total: 18.17 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -2.40 Total: -6.96 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.78 -6.24 -37.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102622.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.835 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds