Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47372 * 300.00231 * 3 2 1 6 6 H 1.48502 * 109.47194 * 60.00147 * 3 2 1 7 7 C 1.38631 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34928 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.42902 * 116.99839 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.30800 * 30.25186 * 10 9 7 12 12 C 1.52586 * 109.38796 * 150.00096 * 10 9 7 13 13 C 1.52575 * 110.72456 * 190.82234 * 12 10 9 14 14 C 1.53096 * 109.96185 * 289.32289 * 13 12 10 15 15 S 1.81754 * 108.83703 * 63.02452 * 14 13 12 16 16 C 1.53095 * 109.39299 * 270.49243 * 10 9 7 17 17 H 0.97000 * 120.00658 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.22563 * 311.14585 * 12 10 9 19 19 H 1.09001 * 109.22349 * 70.50432 * 12 10 9 20 20 H 1.09002 * 109.38965 * 49.47726 * 13 12 10 21 21 H 1.09004 * 109.38998 * 169.17578 * 13 12 10 22 22 H 1.09004 * 109.57375 * 303.22188 * 14 13 12 23 23 H 1.08994 * 109.68335 * 182.89359 * 14 13 12 24 24 H 1.09003 * 109.58088 * 296.64028 * 16 10 9 25 25 H 1.09006 * 109.57282 * 56.88840 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 1 3.0547 -3.3860 0.5159 12 6 1.3439 -4.6716 0.7181 13 6 2.2423 -5.8786 0.9709 14 6 2.5450 -6.5907 -0.3501 15 16 3.4673 -5.4566 -1.4303 16 6 2.3990 -3.9864 -1.4461 17 1 -0.4851 0.8400 0.0004 18 1 0.9774 -4.2909 1.6714 19 1 0.4963 -4.9772 0.1046 20 1 3.1758 -5.5461 1.4250 21 1 1.7386 -6.5693 1.6471 22 1 1.6106 -6.8764 -0.8334 23 1 3.1442 -7.4808 -0.1585 24 1 1.4619 -4.2213 -1.9509 25 1 2.9016 -3.1730 -1.9695 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102623.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = -50.717247 kcal Electronic energy + Delta-G solvation = -9912.784339 eV Core-core repulsion = 8017.518361 eV Total energy + Delta-G solvation = -1895.265979 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.43783 -34.70081 -31.79051 -29.72329 -26.82517 -24.61009 -22.11351 -20.10555 -17.65799 -16.45171 -15.22801 -14.67614 -14.29484 -13.89705 -13.40100 -12.96677 -12.73583 -12.43565 -11.45619 -11.22531 -11.00608 -10.94999 -10.70856 -10.46664 -10.16150 -9.91900 -9.43649 -9.01584 -8.07724 -7.35535 -5.99681 -3.64027 2.13265 2.87685 3.28882 3.32899 3.37012 4.27864 4.94364 5.03281 5.25201 5.29531 5.51028 5.62758 5.71356 5.78783 5.95782 6.11405 6.27601 6.32463 6.61592 6.75177 6.77221 7.44687 8.38450 9.43830 10.08705 11.20946 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.070515 B = 0.010368 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.981315 B = 2699.903014 C = 2896.499271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.024 3.976 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.364 4.364 8 H 0.065 0.935 9 O -0.281 6.281 10 C 0.100 3.900 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.116 4.116 14 C -0.077 4.077 15 S -0.293 6.293 16 C -0.088 4.088 17 H 0.258 0.742 18 H 0.077 0.923 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -9.682 0.289 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.174 4.174 3 Si 0.751 3.249 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.443 4.443 8 H 0.083 0.917 9 O -0.196 6.196 10 C 0.038 3.962 11 H 0.070 0.930 12 C -0.162 4.162 13 C -0.155 4.155 14 C -0.226 4.226 15 S -0.068 6.068 16 C -0.237 4.237 17 H 0.068 0.932 18 H 0.095 0.905 19 H 0.082 0.918 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.051 -9.742 -0.248 10.976 hybrid contribution -0.481 1.025 0.456 1.220 sum 4.570 -8.717 0.208 9.845 Atomic orbital electron populations 1.70027 1.05436 1.25926 1.51716 1.24962 0.95661 0.97772 0.99041 0.85902 0.78915 0.82271 0.77770 1.19820 1.20833 1.20822 1.20955 0.90281 0.82582 1.50470 0.91701 1.85721 1.31480 1.10165 1.92230 1.21888 0.94860 0.88235 0.91178 0.93003 1.21533 0.98410 0.94219 1.02069 1.21714 1.00995 0.97035 0.95769 1.23399 1.02423 0.99133 0.97620 1.86576 1.38098 1.16611 1.65497 1.24248 1.00451 0.95404 1.03560 0.93192 0.90477 0.91819 0.90793 0.91075 0.90138 0.88396 0.90005 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.67 55.48 0.76 -26.94 15 2 C 0.02 0.71 5.49 -17.51 -0.10 0.61 15 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.36 -10.55 9.77 30.88 0.30 -10.25 15 8 H 0.07 1.79 7.64 -52.49 -0.40 1.39 15 9 O -0.28 -7.90 9.42 -16.50 -0.16 -8.05 15 10 C 0.10 2.16 2.50 -26.89 -0.07 2.09 15 11 H 0.05 1.14 7.71 -51.93 -0.40 0.74 15 12 C -0.12 -2.24 5.25 -27.16 -0.14 -2.38 15 13 C -0.12 -1.63 5.75 -26.90 -0.15 -1.78 15 14 C -0.08 -1.04 6.46 37.21 0.24 -0.80 15 15 S -0.29 -4.89 22.33 -107.50 -2.40 -7.29 15 16 C -0.09 -1.74 6.06 37.21 0.23 -1.51 15 17 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 18 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 19 H 0.06 1.13 8.08 -51.93 -0.42 0.72 15 20 H 0.07 1.05 8.06 -51.93 -0.42 0.64 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.08 1.60 8.14 -51.93 -0.42 1.18 15 25 H 0.10 2.18 8.14 -51.92 -0.42 1.75 15 LS Contribution 226.23 15.07 3.41 3.41 Total: -1.00 -31.54 226.23 -6.42 -37.95 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -3.31 Total: -2.02 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.31 Total: -14.03 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.76 Total: -26.94 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.16 Total: -8.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.40 Total: -7.29 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.54 -6.42 -37.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102623.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds