Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86805 * 119.99471 * 2 1 4 4 H 1.48502 * 109.47056 * 89.99824 * 3 2 1 5 5 H 1.48503 * 109.46880 * 209.99431 * 3 2 1 6 6 H 1.48498 * 109.47260 * 329.99842 * 3 2 1 7 7 C 1.39717 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99954 * 14.39808 * 7 2 1 9 9 C 1.41160 * 120.00064 * 194.39899 * 7 2 1 10 10 C 1.37693 * 122.85989 * 188.13827 * 9 7 2 11 11 S 1.70993 * 108.83817 * 179.89933 * 10 9 7 12 12 C 1.75889 * 90.80836 * 0.30288 * 11 10 9 13 13 C 1.50708 * 124.99468 * 179.81913 * 12 11 10 14 14 F 1.39892 * 109.46972 * 270.00154 * 13 12 11 15 15 N 1.28793 * 110.01442 * 359.81651 * 12 11 10 16 16 H 0.97001 * 119.99458 * 174.77973 * 1 2 3 17 17 H 1.08006 * 125.58340 * 0.02562 * 10 9 7 18 18 H 1.09007 * 109.46638 * 30.00159 * 13 12 11 19 19 H 1.08995 * 109.47240 * 149.99668 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 2.4915 2.0466 1.4001 5 1 3.5417 1.4403 -0.6999 6 1 1.4415 2.6527 -0.7001 7 6 2.0089 -1.2099 0.0005 8 1 1.4944 -2.1307 -0.2316 9 6 3.3872 -1.2289 0.3045 10 6 4.1676 -2.3547 0.1650 11 16 5.7699 -1.9766 0.6272 12 6 5.3002 -0.3216 0.9932 13 6 6.2303 0.7473 1.5069 14 9 6.2393 0.7247 2.9056 15 7 4.0447 -0.1573 0.7577 16 1 -0.4849 -0.8366 -0.0764 17 1 3.8244 -3.3183 -0.1818 18 1 7.2377 0.5622 1.1339 19 1 5.8886 1.7230 1.1614 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150683.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -32.069872 kcal Electronic energy + Delta-G solvation = -9274.248694 eV Core-core repulsion = 7218.216588 eV Total energy + Delta-G solvation = -2056.032105 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 187.016 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -47.37299 -38.34758 -33.53192 -30.73772 -27.15212 -25.92156 -21.48980 -19.25379 -18.50648 -16.37879 -15.72464 -15.37521 -15.19677 -13.93812 -13.29594 -12.88015 -12.67303 -12.13385 -11.41151 -10.90843 -10.83400 -10.67464 -10.12610 -9.79023 -9.16631 -8.51089 -8.24136 -7.79635 -7.28364 -4.60342 1.75627 2.38387 3.26935 3.36678 3.45131 3.80218 3.97182 4.26834 4.59173 5.03949 5.21040 5.30802 5.83117 6.30514 6.81295 7.07900 7.52285 7.99690 8.10171 8.63771 8.94069 10.04894 Molecular weight = 187.02amu Principal moments of inertia in cm(-1) A = 0.044359 B = 0.018462 C = 0.013964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.057717 B = 1516.235977 C = 2004.624078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.046 3.954 3 Si 1.120 2.880 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.312 1.312 7 C -0.481 4.481 8 H 0.082 0.918 9 C 0.206 3.794 10 C -0.443 4.443 11 S 0.036 5.964 12 C 0.014 3.986 13 C 0.151 3.849 14 F -0.206 7.206 15 N -0.458 5.458 16 H 0.283 0.717 17 H 0.145 0.855 18 H 0.093 0.907 19 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.758 1.761 0.658 9.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.174 4.174 3 Si 0.950 3.050 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.242 1.242 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.085 3.915 10 C -0.582 4.582 11 S 0.284 5.716 12 C -0.267 4.267 13 C 0.092 3.908 14 F -0.187 7.187 15 N -0.178 5.178 16 H 0.094 0.906 17 H 0.162 0.838 18 H 0.111 0.889 19 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.075 3.257 0.883 10.626 hybrid contribution -1.041 -2.133 -0.245 2.387 sum 9.034 1.124 0.638 9.126 Atomic orbital electron populations 1.70686 1.07890 1.32780 1.32554 1.27451 0.95503 1.05267 0.89221 0.82630 0.73220 0.71022 0.78104 1.20677 1.20283 1.24232 1.20013 0.91368 0.96895 1.43232 0.89950 1.18062 0.94923 0.84922 0.93572 1.25115 0.94789 1.04952 1.33327 1.82598 1.13823 1.08468 1.66701 1.27694 0.94974 0.97449 1.06536 1.20264 0.97765 0.97126 0.75637 1.92803 1.97776 1.97717 1.30389 1.66204 1.05917 1.31202 1.14494 0.90575 0.83759 0.88940 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.94 13.67 55.54 0.76 -22.18 13 2 C 0.05 1.27 5.51 -17.35 -0.10 1.18 13 3 Si 1.12 27.34 26.12 -169.99 -4.44 22.90 13 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 13 5 H -0.28 -6.57 6.44 56.52 0.36 -6.20 13 6 H -0.31 -7.36 7.11 56.52 0.40 -6.96 13 7 C -0.48 -13.70 9.62 -37.92 -0.36 -14.06 13 8 H 0.08 2.38 8.06 -52.49 -0.42 1.95 13 9 C 0.21 5.57 6.17 -86.17 -0.53 5.04 13 10 C -0.44 -10.89 10.98 30.53 0.34 -10.56 13 11 S 0.04 0.74 23.16 -107.50 -2.49 -1.75 13 12 C 0.01 0.30 7.29 -13.55 -0.10 0.21 13 13 C 0.15 2.43 8.15 36.01 0.29 2.72 13 14 F -0.21 -3.63 17.34 2.25 0.04 -3.59 13 15 N -0.46 -11.62 5.59 -8.36 -0.05 -11.66 13 16 H 0.28 7.67 8.73 -40.82 -0.36 7.31 13 17 H 0.14 3.42 8.06 -52.48 -0.42 3.00 13 18 H 0.09 1.11 8.14 -51.93 -0.42 0.69 13 19 H 0.10 1.40 8.14 -51.93 -0.42 0.98 13 LS Contribution 195.38 15.07 2.94 2.94 Total: -1.00 -29.86 195.38 -4.58 -34.44 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -0.88 Total: -5.62 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.46 Total: -15.47 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.71 Total: -33.84 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 27.34 SS G_CDS: -4.44 Total: 22.90 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -29.86 -4.58 -34.44 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150683.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.369 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds