Wall clock time and date at job start Mon Mar 30 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46851 * 110.99844 * 2 1 4 4 C 1.53038 * 109.51914 * 185.83673 * 3 2 1 5 5 C 1.53119 * 109.28270 * 300.81591 * 4 3 2 6 6 F 1.39901 * 109.52317 * 297.69000 * 5 4 3 7 7 C 1.50694 * 109.52480 * 177.56204 * 5 4 3 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 5 4 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 5 4 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 299.99832 * 11 9 7 14 14 H 1.48498 * 109.47150 * 60.00043 * 11 9 7 15 15 C 1.53125 * 109.15762 * 57.65856 * 5 4 3 16 16 C 1.46850 * 110.99706 * 124.20595 * 2 1 3 17 17 H 1.09005 * 109.47014 * 60.00555 * 1 2 3 18 18 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47230 * 300.00775 * 1 2 3 20 20 H 1.08993 * 109.46461 * 65.82575 * 3 2 1 21 21 H 1.08994 * 109.45109 * 305.83874 * 3 2 1 22 22 H 1.09007 * 109.50228 * 180.87703 * 4 3 2 23 23 H 1.09001 * 109.53656 * 60.78086 * 4 3 2 24 24 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 25 25 H 1.08999 * 109.50539 * 62.28443 * 15 5 4 26 26 H 1.08995 * 109.50470 * 182.41066 * 15 5 4 27 27 H 1.09002 * 109.46315 * 294.17540 * 16 2 1 28 28 H 1.08998 * 109.46656 * 54.15619 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5371 1.0145 6 9 3.8247 1.1777 2.2229 7 6 5.6133 0.4464 0.8433 8 1 6.0885 0.9109 -0.0080 9 6 6.3740 -0.2296 1.7736 10 7 5.7954 -0.7948 2.8106 11 14 8.2264 -0.3425 1.5610 12 1 8.8077 -1.1156 2.6878 13 1 8.5369 -1.0252 0.2794 14 1 8.8073 1.0241 1.5473 15 6 3.5182 -0.8714 1.0210 16 6 1.9952 -0.7707 1.1338 17 1 -0.3633 0.5138 -0.8901 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.7325 1.8609 0.9375 21 1 1.5635 1.9255 -0.8331 22 1 3.9099 2.3513 -0.1310 23 1 3.7820 0.8571 -1.0906 24 1 6.3306 -1.2707 3.4649 25 1 3.7814 -1.3836 0.0955 26 1 3.9098 -1.4302 1.8710 27 1 1.7324 -0.2707 2.0661 28 1 1.5635 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:05 Heat of formation + Delta-G solvation = -55.578508 kcal Electronic energy + Delta-G solvation = -12266.879731 eV Core-core repulsion = 10038.741533 eV Total energy + Delta-G solvation = -2228.138198 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.57974 -37.60347 -33.39449 -31.28943 -29.91517 -26.83856 -24.25387 -22.26082 -21.33269 -18.46397 -16.73077 -15.24873 -14.58574 -14.38962 -14.15196 -13.59365 -13.37540 -13.10375 -12.20464 -11.83604 -11.48374 -11.28541 -10.98077 -10.93803 -10.63781 -10.54292 -10.35463 -10.14941 -9.96797 -8.78926 -8.64744 -8.43896 -7.72808 -6.05608 -4.23263 3.29983 3.34138 3.36820 4.36808 4.54622 5.21990 5.52364 5.64924 5.74585 5.88398 6.08658 6.10292 6.21530 6.25648 6.47245 6.50073 6.56417 6.74543 7.00015 7.17510 7.55923 7.60222 7.75258 7.90618 8.05518 8.22941 8.78992 9.49442 10.96961 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.074195 B = 0.012646 C = 0.012104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.295300 B = 2213.674952 C = 2312.787250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.129 4.129 5 C 0.241 3.759 6 F -0.234 7.234 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.077 3.923 10 N -0.873 5.873 11 Si 0.899 3.101 12 H -0.286 1.286 13 H -0.274 1.274 14 H -0.275 1.275 15 C -0.124 4.124 16 C 0.053 3.947 17 H 0.060 0.940 18 H 0.062 0.938 19 H 0.018 0.982 20 H 0.031 0.969 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.264 0.736 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.029 0.971 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 0.639 -3.795 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.167 4.167 5 C 0.223 3.777 6 F -0.215 7.215 7 C -0.592 4.592 8 H 0.082 0.918 9 C -0.128 4.128 10 N -0.509 5.509 11 Si 0.726 3.274 12 H -0.211 1.211 13 H -0.200 1.200 14 H -0.201 1.201 15 C -0.163 4.163 16 C -0.074 4.074 17 H 0.079 0.921 18 H 0.080 0.920 19 H 0.037 0.963 20 H 0.049 0.951 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.048 0.952 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.033 0.316 -4.010 7.251 hybrid contribution 0.643 0.337 0.748 1.042 sum -5.389 0.653 -3.263 6.334 Atomic orbital electron populations 1.22314 0.88862 1.01256 0.99806 1.62023 1.06211 1.14142 1.44501 1.22079 0.96886 0.88696 0.99419 1.22155 0.92693 1.00832 1.01048 1.18342 0.94401 0.87926 0.77051 1.92698 1.94873 1.83772 1.50195 1.21391 0.91147 1.36443 1.10197 0.91780 1.25035 0.99061 0.94138 0.94593 1.69916 1.35706 1.33825 1.11420 0.86563 0.84814 0.78310 0.77746 1.21130 1.19983 1.20062 1.22122 0.90338 1.00077 1.03716 1.22241 0.98284 0.96367 0.90519 0.92098 0.91957 0.96332 0.95121 0.92032 0.92092 0.90938 0.92627 0.92242 0.88014 0.95237 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 60.06 0.58 0.97 15 2 N -0.54 -10.34 4.91 -242.95 -1.19 -11.53 15 3 C 0.06 1.10 5.35 -3.83 -0.02 1.08 15 4 C -0.13 -2.83 5.10 -26.65 -0.14 -2.97 15 5 C 0.24 6.24 0.77 -91.65 -0.07 6.17 15 6 F -0.23 -6.66 15.52 2.25 0.03 -6.62 15 7 C -0.55 -15.47 8.31 -34.44 -0.29 -15.76 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 15 9 C 0.08 2.13 5.27 -17.82 -0.09 2.04 15 10 N -0.87 -25.13 11.04 55.43 0.61 -24.52 15 11 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 15 C -0.12 -3.02 4.91 -26.64 -0.13 -3.15 15 16 C 0.05 1.11 5.35 -3.83 -0.02 1.09 15 17 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 18 H 0.06 0.85 8.09 -51.93 -0.42 0.43 15 19 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 15 20 H 0.03 0.62 7.88 -51.93 -0.41 0.21 15 21 H 0.06 1.02 8.12 -51.93 -0.42 0.60 15 22 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.07 1.55 8.14 -51.93 -0.42 1.13 15 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.06 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.10 2.72 6.17 -51.93 -0.32 2.40 15 27 H 0.03 0.65 7.88 -51.93 -0.41 0.24 15 28 H 0.06 1.12 8.09 -51.93 -0.42 0.70 15 LS Contribution 229.98 15.07 3.47 3.47 Total: -1.00 -29.44 229.98 -6.34 -35.78 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.06 Total: -2.26 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.18 Total: -10.53 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.58 Total: -36.04 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.03 Total: -6.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.44 -6.34 -35.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.797 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds