Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39897 * 109.47055 * 2 1 4 4 C 1.50709 * 109.47175 * 119.99868 * 2 1 3 5 5 H 1.08000 * 119.99888 * 114.46633 * 4 2 1 6 6 C 1.37880 * 119.99963 * 294.46708 * 4 2 1 7 7 N 1.31507 * 120.00172 * 158.26895 * 6 4 2 8 8 Si 1.86807 * 119.99830 * 338.26821 * 6 4 2 9 9 H 1.48494 * 109.46902 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47242 * 60.00169 * 8 6 4 11 11 H 1.48504 * 109.47078 * 299.99840 * 8 6 4 12 12 C 1.53001 * 109.47296 * 239.99956 * 2 1 3 13 13 C 1.54887 * 110.75594 * 176.06634 * 12 2 1 14 14 C 1.54472 * 104.10084 * 203.89576 * 13 12 2 15 15 C 1.53873 * 106.68298 * 23.33916 * 14 13 12 16 16 C 1.54271 * 106.59905 * 0.16161 * 15 14 13 17 17 H 1.09000 * 109.47213 * 293.18004 * 1 2 3 18 18 H 1.08995 * 109.46949 * 53.18190 * 1 2 3 19 19 H 1.09004 * 109.46987 * 173.18042 * 1 2 3 20 20 H 0.97004 * 119.99562 * 354.92753 * 7 6 4 21 21 H 1.09000 * 110.66878 * 299.30066 * 12 2 1 22 22 H 1.09005 * 110.48758 * 322.42202 * 13 12 2 23 23 H 1.08996 * 110.49264 * 85.06250 * 13 12 2 24 24 H 1.09001 * 109.85298 * 264.10336 * 14 13 12 25 25 H 1.08996 * 110.16639 * 142.74704 * 14 13 12 26 26 H 1.09001 * 110.03547 * 240.88017 * 15 14 13 27 27 H 1.08997 * 110.07545 * 119.46613 * 15 14 13 28 28 H 1.09007 * 110.48410 * 217.71269 * 16 15 14 29 29 H 1.08996 * 110.48812 * 95.06818 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5775 -1.6377 1.1340 6 6 1.7959 -0.1766 2.4796 7 7 1.8332 -0.9495 3.5429 8 14 1.4225 1.6448 2.6615 9 1 1.2085 1.9653 4.0955 10 1 0.1976 1.9783 1.8911 11 1 2.5652 2.4386 2.1425 12 6 2.0400 -0.7213 -1.2492 13 6 3.5853 -0.6531 -1.3299 14 6 3.8919 -0.8325 -2.8332 15 6 2.6255 -0.4064 -3.5963 16 6 1.5932 0.0216 -2.5327 17 1 -0.3633 0.4045 0.9447 18 1 -0.3633 0.6158 -0.8227 19 1 -0.3633 -1.0204 -0.1220 20 1 1.9539 -1.9068 3.4426 21 1 1.6977 -1.7560 -1.2628 22 1 3.9431 0.3160 -0.9821 23 1 4.0337 -1.4578 -0.7473 24 1 4.1198 -1.8777 -3.0424 25 1 4.7324 -0.2021 -3.1232 26 1 2.2388 -1.2447 -4.1758 27 1 2.8505 0.4313 -4.2564 28 1 0.5912 -0.2920 -2.8258 29 1 1.6271 1.1003 -2.3806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168185.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = -77.591975 kcal Electronic energy + Delta-G solvation = -12175.834820 eV Core-core repulsion = 10012.167957 eV Total energy + Delta-G solvation = -2163.666863 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.35892 -37.44788 -33.35495 -31.13527 -28.27754 -27.09957 -24.77034 -21.22300 -19.70149 -18.70682 -17.53687 -15.50783 -15.06011 -14.35412 -13.73598 -13.30443 -13.03079 -12.85782 -12.26503 -11.94941 -11.84610 -11.07186 -10.84030 -10.58909 -10.55232 -10.20296 -10.10185 -10.02879 -9.93090 -9.78167 -8.96321 -8.76061 -8.30897 -6.51484 -4.25129 3.50299 3.60342 3.85531 4.53842 5.13427 5.14568 5.17708 5.21415 5.86649 5.91206 6.02160 6.06437 6.07808 6.21508 6.30315 6.33176 6.35809 6.44910 6.50984 6.66416 6.78274 6.89938 7.04361 7.16549 7.47137 7.90630 8.30159 8.78863 9.49446 10.82560 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.057017 B = 0.014944 C = 0.014062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.966285 B = 1873.227939 C = 1990.658457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.213 3.787 3 F -0.234 7.234 4 C -0.629 4.629 5 H 0.068 0.932 6 C 0.044 3.956 7 N -0.889 5.889 8 Si 1.066 2.934 9 H -0.306 1.306 10 H -0.283 1.283 11 H -0.286 1.286 12 C -0.092 4.092 13 C -0.106 4.106 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.125 4.125 17 H 0.058 0.942 18 H 0.034 0.966 19 H 0.058 0.942 20 H 0.270 0.730 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 1.408 -10.619 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.195 3.805 3 F -0.215 7.215 4 C -0.666 4.666 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.520 5.520 8 Si 0.898 3.102 9 H -0.235 1.235 10 H -0.210 1.210 11 H -0.213 1.213 12 C -0.111 4.111 13 C -0.144 4.144 14 C -0.164 4.164 15 C -0.159 4.159 16 C -0.163 4.163 17 H 0.077 0.923 18 H 0.053 0.947 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.356 2.597 -9.503 9.858 hybrid contribution 0.335 -1.266 -1.157 1.747 sum -0.021 1.331 -10.660 10.743 Atomic orbital electron populations 1.22525 0.97572 1.01106 1.00807 1.18903 0.90886 0.75496 0.95260 1.92431 1.90725 1.41704 1.96626 1.22116 1.42606 1.11165 0.90741 0.91430 1.25851 0.92353 1.06090 0.92047 1.70881 1.42760 1.06651 1.31737 0.83824 0.77462 0.75402 0.73540 1.23521 1.20962 1.21285 1.22484 0.95577 0.99318 0.93720 1.22243 0.95948 1.02394 0.93808 1.22210 0.97251 1.00222 0.96674 1.22100 0.96015 0.99988 0.97769 1.22461 0.97706 1.00902 0.95208 0.92275 0.94660 0.92332 0.92033 0.90751 0.91217 0.91935 0.92688 0.92599 0.92623 0.92622 0.92395 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.33 37.16 0.31 -3.29 15 2 C 0.21 5.13 0.55 -91.77 -0.05 5.08 15 3 F -0.23 -5.87 11.82 2.25 0.03 -5.84 15 4 C -0.63 -17.59 8.15 -34.43 -0.28 -17.87 15 5 H 0.07 1.99 7.90 -52.49 -0.41 1.58 15 6 C 0.04 1.30 5.22 -17.82 -0.09 1.20 15 7 N -0.89 -27.19 13.70 55.43 0.76 -26.43 15 8 Si 1.07 27.51 24.93 -169.99 -4.24 23.27 15 9 H -0.31 -7.90 7.11 56.52 0.40 -7.50 15 10 H -0.28 -6.86 6.04 56.52 0.34 -6.51 15 11 H -0.29 -7.31 7.06 56.52 0.40 -6.91 15 12 C -0.09 -1.88 2.25 -88.63 -0.20 -2.08 15 13 C -0.11 -2.07 5.70 -24.96 -0.14 -2.21 15 14 C -0.13 -1.96 6.81 -25.50 -0.17 -2.13 15 15 C -0.12 -1.78 6.80 -25.61 -0.17 -1.96 15 16 C -0.13 -2.15 5.34 -25.07 -0.13 -2.29 15 17 H 0.06 1.39 5.31 -51.93 -0.28 1.11 15 18 H 0.03 0.68 7.60 -51.93 -0.39 0.29 15 19 H 0.06 1.22 8.14 -51.93 -0.42 0.79 15 20 H 0.27 8.12 8.73 -40.82 -0.36 7.76 15 21 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 22 H 0.07 1.46 7.39 -51.93 -0.38 1.08 15 23 H 0.06 1.26 8.09 -51.93 -0.42 0.84 15 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 29 H 0.07 1.22 7.44 -51.93 -0.39 0.84 15 LS Contribution 229.25 15.07 3.45 3.45 Total: -1.00 -29.39 229.25 -5.38 -34.78 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.45 Total: -3.69 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -0.94 Total: -25.54 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.76 Total: -26.43 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.03 Total: -5.84 kcal Atomic # 14 Polarization: 27.51 SS G_CDS: -4.24 Total: 23.27 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.39 -5.38 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168185.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.814 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds