Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48502 * 109.47271 * 89.99969 * 3 2 1 5 5 H 1.48505 * 109.46880 * 209.99449 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99776 * 3 2 1 7 7 C 1.38636 * 120.00267 * 179.72032 * 2 1 3 8 8 H 1.08001 * 119.99777 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.42900 * 117.00165 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47222 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.50641 * 55.08565 * 11 10 9 13 13 C 1.53100 * 109.50685 * 175.21683 * 11 10 9 14 14 O 1.43013 * 109.25639 * 176.78254 * 13 11 10 15 15 C 1.43010 * 113.74318 * 301.33484 * 14 13 11 16 16 C 1.53098 * 109.26292 * 58.66841 * 15 14 13 17 17 N 1.47015 * 109.50808 * 295.00619 * 11 10 9 18 18 H 0.97005 * 119.99693 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46740 * 300.00260 * 10 9 7 20 20 H 1.08998 * 109.46814 * 60.00487 * 10 9 7 21 21 H 1.09000 * 109.50634 * 296.72009 * 13 11 10 22 22 H 1.09002 * 109.50401 * 56.85333 * 13 11 10 23 23 H 1.09001 * 109.50581 * 298.73646 * 15 14 13 24 24 H 1.08999 * 109.54474 * 178.62883 * 15 14 13 25 25 H 1.08998 * 109.51163 * 183.22378 * 16 15 14 26 26 H 1.09001 * 109.50770 * 63.08714 * 16 15 14 27 27 H 1.00893 * 111.00308 * 57.67060 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 1.4001 5 1 3.5474 1.4402 -0.7000 6 1 1.4472 2.6526 -0.7000 7 6 2.0091 -1.2006 0.0059 8 1 3.0891 -1.2005 0.0063 9 8 1.3345 -2.3691 0.0110 10 6 2.1129 -3.5675 0.0164 11 6 1.1809 -4.7809 0.0211 12 1 0.4931 -4.7149 -0.8220 13 6 2.0100 -6.0628 -0.0936 14 8 1.1408 -7.1956 -0.0132 15 6 0.3817 -7.2541 1.1974 16 6 -0.4640 -5.9843 1.3252 17 7 0.4168 -4.8082 1.2768 18 1 -0.4850 -0.8401 -0.0004 19 1 2.7416 -3.5962 -0.8734 20 1 2.7416 -3.5884 0.9065 21 1 2.5340 -6.0731 -1.0493 22 1 2.7345 -6.1016 0.7199 23 1 1.0588 -7.3275 2.0484 24 1 -0.2720 -8.1261 1.1762 25 1 -1.0007 -5.9982 2.2738 26 1 -1.1781 -5.9382 0.5029 27 1 -0.1103 -3.9564 1.3979 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169052.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = -112.668904 kcal Electronic energy + Delta-G solvation = -11753.673772 eV Core-core repulsion = 9510.687159 eV Total energy + Delta-G solvation = -2242.986613 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.53882 -38.45640 -35.74680 -34.01397 -32.68659 -28.24516 -26.98801 -25.73500 -23.52272 -21.33556 -20.14265 -17.97244 -17.46432 -16.76353 -16.58954 -16.28364 -15.56845 -15.47594 -15.18014 -14.92321 -14.50774 -13.30501 -12.70433 -12.62660 -12.36651 -12.14294 -11.89713 -11.64201 -11.58368 -11.34756 -10.83792 -10.21164 -9.59718 -8.68885 -5.98621 1.52543 1.65220 1.80925 2.48279 2.75181 2.99359 3.17725 3.37143 3.91864 3.97284 4.00903 4.21026 4.28849 4.44003 4.50035 4.57975 4.61248 4.78295 4.87370 4.95142 5.36092 5.84581 6.04025 6.11303 6.42671 7.15119 7.85492 8.80094 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.091133 B = 0.008727 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.168958 B = 3207.742078 C = 3406.011325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.063 4.063 3 Si 1.145 2.855 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.460 4.460 8 H 0.059 0.941 9 O -0.352 6.352 10 C 0.085 3.915 11 C 0.062 3.938 12 H 0.028 0.972 13 C 0.080 3.920 14 O -0.397 6.397 15 C 0.061 3.939 16 C 0.016 3.984 17 N -0.688 5.688 18 H 0.254 0.746 19 H 0.038 0.962 20 H 0.034 0.966 21 H 0.113 0.887 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.029 0.971 27 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -11.541 2.020 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.256 4.256 3 Si 0.964 3.036 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.204 1.204 7 C -0.538 4.538 8 H 0.077 0.923 9 O -0.268 6.268 10 C 0.008 3.992 11 C -0.048 4.048 12 H 0.046 0.954 13 C 0.003 3.997 14 O -0.315 6.315 15 C -0.016 4.016 16 C -0.113 4.113 17 N -0.321 5.321 18 H 0.063 0.937 19 H 0.056 0.944 20 H 0.052 0.948 21 H 0.131 0.869 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.123 0.877 26 H 0.048 0.952 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.057 -10.399 2.229 11.065 hybrid contribution -0.520 -1.201 -0.462 1.388 sum 2.537 -11.600 1.767 12.004 Atomic orbital electron populations 1.70712 1.07501 1.29321 1.50590 1.27983 0.97134 1.04529 0.95922 0.82528 0.73573 0.69571 0.77973 1.19572 1.18964 1.20406 1.22131 0.91824 0.84920 1.54919 0.92290 1.85213 1.34983 1.12433 1.94213 1.22182 0.93286 0.84925 0.98789 1.22084 0.96161 0.95316 0.91273 0.95395 1.22567 0.91177 0.82307 1.03699 1.87939 1.57781 1.44726 1.41067 1.22893 0.94452 0.97336 0.86908 1.22780 0.94824 0.91315 1.02420 1.60647 1.30443 1.06453 1.34561 0.93745 0.94410 0.94759 0.86869 0.91377 0.91659 0.85613 0.87697 0.95245 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.09 13.70 21.61 0.30 -60.79 15 2 C -0.06 -3.80 5.49 84.83 0.47 -3.33 15 3 Si 1.15 50.94 29.92 68.60 2.05 53.00 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 7 C -0.46 -27.71 9.89 67.92 0.67 -27.04 15 8 H 0.06 3.38 7.77 -2.91 -0.02 3.36 15 9 O -0.35 -20.36 8.73 -81.91 -0.72 -21.08 15 10 C 0.09 3.85 5.64 71.98 0.41 4.25 15 11 C 0.06 2.35 2.93 44.93 0.13 2.49 15 12 H 0.03 1.16 8.14 -2.38 -0.02 1.14 15 13 C 0.08 2.38 6.29 72.02 0.45 2.84 15 14 O -0.40 -11.57 10.83 -148.98 -1.61 -13.19 15 15 C 0.06 1.45 7.01 72.01 0.50 1.95 15 16 C 0.02 0.44 6.76 86.31 0.58 1.02 15 17 N -0.69 -25.03 6.56 -490.68 -3.22 -28.25 15 18 H 0.25 17.11 7.97 -92.70 -0.74 16.37 15 19 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.11 2.96 8.14 -2.39 -0.02 2.95 15 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.13 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 15 27 H 0.34 14.32 8.42 -89.70 -0.76 13.56 15 Total: -1.00 -71.23 232.52 0.45 -70.78 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.43 Total: 17.35 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.22 Total: -17.82 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.92 Total: -89.04 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -2.33 Total: -34.26 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 53.00 kcal Total: -71.23 0.45 -70.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169052.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.890 kcal (2) G-P(sol) polarization free energy of solvation -71.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds