Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48503 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47259 * 299.99780 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99748 * 3 2 1 7 7 C 1.37873 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46573 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50792 * 305.07833 * 10 9 7 12 12 C 1.53038 * 109.50515 * 65.19795 * 10 9 7 13 13 N 1.46830 * 109.51757 * 179.11465 * 12 10 9 14 14 C 1.46847 * 111.21086 * 298.25173 * 13 12 10 15 15 C 1.53044 * 109.51335 * 61.74856 * 14 13 12 16 16 C 1.53117 * 109.27792 * 300.82256 * 15 14 13 17 17 H 1.08998 * 109.52156 * 297.68928 * 16 15 14 18 18 F 1.39892 * 109.52097 * 177.56169 * 16 15 14 19 19 H 0.96999 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47566 * 60.00467 * 9 7 2 21 21 H 1.08997 * 109.47061 * 299.99864 * 9 7 2 22 22 H 1.08995 * 109.46433 * 299.13417 * 12 10 9 23 23 H 1.09004 * 109.46142 * 59.11359 * 12 10 9 24 24 H 1.00904 * 110.98205 * 174.15538 * 13 12 10 25 25 H 1.09002 * 109.46448 * 301.73578 * 14 13 12 26 26 H 1.08994 * 109.45958 * 181.75943 * 14 13 12 27 27 H 1.09001 * 109.49858 * 60.76701 * 15 14 13 28 28 H 1.09000 * 109.49965 * 180.88251 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9306 -3.5549 -0.8413 12 6 3.0373 -3.6571 1.3090 13 7 3.9768 -4.7854 1.3183 14 6 3.2666 -6.0687 1.2463 15 6 2.4815 -6.1456 -0.0652 16 6 1.4846 -4.9850 -0.1264 17 1 0.7704 -5.0748 0.6920 18 9 0.8031 -5.0180 -1.3476 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 3.5914 -2.7224 1.3948 23 1 2.3497 -3.7502 2.1496 24 1 4.5770 -4.7492 2.1286 25 1 2.5779 -6.1504 2.0872 26 1 3.9873 -6.8854 1.2865 27 1 3.1711 -6.0779 -0.9066 28 1 1.9419 -7.0916 -0.1113 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261176117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = -72.178630 kcal Electronic energy + Delta-G solvation = -11845.387664 eV Core-core repulsion = 9616.529630 eV Total energy + Delta-G solvation = -2228.858034 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.96281 -37.90909 -33.57004 -31.42877 -30.85046 -26.75287 -23.55756 -22.93334 -20.85262 -19.32601 -16.46691 -16.10771 -15.29786 -14.58810 -14.43283 -14.34009 -14.26473 -13.06791 -12.31323 -12.13071 -12.01769 -11.59618 -11.35478 -11.03208 -10.89944 -10.67206 -10.15228 -9.97063 -9.85196 -9.18827 -8.90369 -8.34968 -8.16010 -5.98794 -4.01139 3.31968 3.39661 3.43696 4.46174 4.51961 4.92520 5.11559 5.19862 5.37071 5.46369 5.61916 5.73159 5.81090 5.96833 6.13987 6.19340 6.44735 6.66564 6.83804 6.99524 7.37423 7.61479 7.69894 7.81472 8.00380 8.41220 9.05245 9.62667 11.12634 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.053707 B = 0.011295 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.220955 B = 2478.290972 C = 2850.261627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.101 4.101 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.696 5.696 14 C 0.063 3.937 15 C -0.142 4.142 16 C 0.092 3.908 17 H 0.071 0.929 18 F -0.215 7.215 19 H 0.260 0.740 20 H 0.026 0.974 21 H 0.015 0.985 22 H 0.090 0.910 23 H 0.026 0.974 24 H 0.338 0.662 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -9.734 3.120 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.055 4.055 13 N -0.327 5.327 14 C -0.067 4.067 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.089 0.911 18 F -0.196 7.196 19 H 0.069 0.931 20 H 0.044 0.956 21 H 0.034 0.966 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.155 0.845 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.106 -9.591 2.415 11.130 hybrid contribution -0.063 0.890 0.841 1.226 sum 5.043 -8.701 3.256 10.571 Atomic orbital electron populations 1.69981 1.06081 1.26480 1.50878 1.25028 0.94817 0.99260 0.95373 0.86551 0.80147 0.83859 0.77544 1.19680 1.21019 1.21103 1.21241 0.93039 0.90727 1.50445 0.92344 1.19146 0.93497 0.90886 0.97716 1.21841 0.98168 0.94070 0.97908 0.90571 1.21944 0.93705 0.93367 0.96525 1.60374 1.23194 1.02305 1.46821 1.21781 0.96381 0.92461 0.96047 1.22192 0.98470 0.98079 0.99302 1.21748 0.92923 0.97244 0.82566 0.91145 1.92765 1.81831 1.97575 1.47426 0.93061 0.95610 0.96640 0.89123 0.95530 0.84515 0.95386 0.90922 0.90291 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 7 C -0.52 -14.50 8.42 -34.44 -0.29 -14.79 15 8 H 0.06 1.59 7.07 -52.49 -0.37 1.22 15 9 C 0.03 0.66 4.40 -27.88 -0.12 0.53 15 10 C -0.10 -2.13 2.08 -90.53 -0.19 -2.32 15 11 H 0.08 1.71 8.14 -51.93 -0.42 1.29 15 12 C 0.07 1.35 5.63 -3.84 -0.02 1.33 15 13 N -0.70 -10.58 6.84 -113.83 -0.78 -11.36 15 14 C 0.06 0.84 6.55 -3.83 -0.03 0.82 15 15 C -0.14 -2.12 5.83 -26.65 -0.16 -2.28 15 16 C 0.09 1.71 3.33 -26.61 -0.09 1.62 15 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 18 F -0.22 -4.51 16.59 2.25 0.04 -4.47 15 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.03 0.74 7.75 -51.93 -0.40 0.34 15 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.09 1.80 6.99 -51.93 -0.36 1.43 15 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.34 4.27 8.90 -39.29 -0.35 3.92 15 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 15 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 LS Contribution 233.43 15.07 3.52 3.52 Total: -1.00 -30.33 233.43 -6.50 -36.83 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.00 Total: -1.24 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.99 Total: -13.56 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.04 Total: -37.74 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.04 Total: -4.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.33 -6.50 -36.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261176117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.350 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds