Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48503 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47259 * 299.99780 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99748 * 3 2 1 7 7 C 1.37873 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46573 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50792 * 305.07833 * 10 9 7 12 12 C 1.53038 * 109.50515 * 65.19795 * 10 9 7 13 13 N 1.46830 * 109.51757 * 179.11465 * 12 10 9 14 14 C 1.46847 * 111.21086 * 298.25173 * 13 12 10 15 15 C 1.53044 * 109.51335 * 61.74856 * 14 13 12 16 16 C 1.53117 * 109.27792 * 300.82256 * 15 14 13 17 17 H 1.08998 * 109.52156 * 297.68928 * 16 15 14 18 18 F 1.39892 * 109.52097 * 177.56169 * 16 15 14 19 19 H 0.96999 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47566 * 60.00467 * 9 7 2 21 21 H 1.08997 * 109.47061 * 299.99864 * 9 7 2 22 22 H 1.08995 * 109.46433 * 299.13417 * 12 10 9 23 23 H 1.09004 * 109.46142 * 59.11359 * 12 10 9 24 24 H 1.00904 * 110.98205 * 174.15538 * 13 12 10 25 25 H 1.09002 * 109.46448 * 301.73578 * 14 13 12 26 26 H 1.08994 * 109.45958 * 181.75943 * 14 13 12 27 27 H 1.09001 * 109.49858 * 60.76701 * 15 14 13 28 28 H 1.09000 * 109.49965 * 180.88251 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9306 -3.5549 -0.8413 12 6 3.0373 -3.6571 1.3090 13 7 3.9768 -4.7854 1.3183 14 6 3.2666 -6.0687 1.2463 15 6 2.4815 -6.1456 -0.0652 16 6 1.4846 -4.9850 -0.1264 17 1 0.7704 -5.0748 0.6920 18 9 0.8031 -5.0180 -1.3476 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 3.5914 -2.7224 1.3948 23 1 2.3497 -3.7502 2.1496 24 1 4.5770 -4.7492 2.1286 25 1 2.5779 -6.1504 2.0872 26 1 3.9873 -6.8854 1.2865 27 1 3.1711 -6.0779 -0.9066 28 1 1.9419 -7.0916 -0.1113 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261176117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = -93.232116 kcal Electronic energy + Delta-G solvation = -11846.300611 eV Core-core repulsion = 9616.529630 eV Total energy + Delta-G solvation = -2229.770981 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.57184 -39.32068 -35.53573 -33.28434 -32.18001 -28.65839 -25.38725 -24.35973 -22.44338 -20.86456 -18.55641 -17.55604 -16.89770 -16.35031 -15.99109 -15.93356 -15.73097 -14.48399 -14.21274 -13.91047 -13.64014 -13.11526 -12.92917 -12.74616 -12.62096 -12.41939 -11.82706 -11.76960 -11.59435 -11.11000 -10.73145 -10.57586 -9.38177 -8.20009 -6.30823 1.39914 1.40881 1.54135 2.40832 3.12613 3.32013 3.61956 3.72566 3.82884 4.02743 4.21259 4.42531 4.59127 4.64474 4.82427 4.95186 4.95445 5.06435 5.22243 5.26871 5.45728 5.66580 5.81016 6.07426 6.21984 6.58475 6.84574 7.38208 8.92505 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.053707 B = 0.011295 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.220955 B = 2478.290972 C = 2850.261627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.095 4.095 11 H 0.060 0.940 12 C 0.085 3.915 13 N -0.697 5.697 14 C 0.062 3.938 15 C -0.134 4.134 16 C 0.084 3.916 17 H 0.076 0.924 18 F -0.232 7.232 19 H 0.263 0.737 20 H -0.014 1.014 21 H -0.006 1.006 22 H 0.074 0.926 23 H 0.026 0.974 24 H 0.356 0.644 25 H 0.039 0.961 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -10.522 3.901 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.083 0.917 9 C -0.006 4.006 10 C -0.115 4.115 11 H 0.078 0.922 12 C -0.044 4.044 13 N -0.330 5.330 14 C -0.067 4.067 15 C -0.172 4.172 16 C 0.048 3.952 17 H 0.094 0.906 18 F -0.213 7.213 19 H 0.072 0.928 20 H 0.005 0.995 21 H 0.012 0.988 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.176 0.824 25 H 0.057 0.943 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.782 -10.400 3.208 12.824 hybrid contribution -0.613 1.100 0.585 1.388 sum 6.169 -9.300 3.794 11.787 Atomic orbital electron populations 1.70120 1.07932 1.27686 1.51910 1.26000 0.95714 1.03441 0.94813 0.85386 0.79179 0.78718 0.77695 1.18345 1.20708 1.20239 1.21614 0.93491 0.91710 1.50069 0.91746 1.18981 0.93865 0.93012 0.94724 1.21652 0.97134 0.93662 0.99013 0.92195 1.21622 0.93781 0.94390 0.94633 1.60263 1.22615 1.02019 1.48103 1.21923 0.97229 0.92227 0.95285 1.22175 0.97561 0.97241 1.00215 1.21944 0.93716 0.97551 0.81965 0.90608 1.92731 1.82375 1.97645 1.48562 0.92821 0.99513 0.98755 0.90784 0.95550 0.82423 0.94266 0.87413 0.90813 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.79 15 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 15 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 7 C -0.53 -30.41 8.42 25.60 0.22 -30.19 15 8 H 0.06 3.53 7.07 -2.91 -0.02 3.51 15 9 C 0.03 1.73 4.40 29.85 0.13 1.86 15 10 C -0.10 -4.08 2.08 -10.74 -0.02 -4.11 15 11 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 12 C 0.09 3.08 5.63 86.33 0.49 3.57 15 13 N -0.70 -19.29 6.84 -514.04 -3.52 -22.81 15 14 C 0.06 1.43 6.55 86.33 0.57 1.99 15 15 C -0.13 -3.63 5.83 30.65 0.18 -3.45 15 16 C 0.08 3.11 3.33 30.68 0.10 3.21 15 17 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 18 F -0.23 -9.85 16.59 44.97 0.75 -9.10 15 19 H 0.26 15.27 8.31 -92.71 -0.77 14.50 15 20 H -0.01 -0.83 7.75 -2.39 -0.02 -0.85 15 21 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 22 H 0.07 2.91 6.99 -2.39 -0.02 2.89 15 23 H 0.03 0.95 8.14 -2.38 -0.02 0.93 15 24 H 0.36 7.84 8.90 -89.69 -0.80 7.04 15 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 15 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 Total: -1.00 -66.38 233.43 2.00 -64.38 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.34 Total: 5.37 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 2.12 Total: -26.78 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.23 Total: -80.60 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 0.75 Total: -9.10 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.38 2.00 -64.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261176117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.850 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds