Wall clock time and date at job start Mon Mar 30 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86806 * 119.99810 * 2 1 4 4 H 1.48502 * 109.46814 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46846 * 299.99558 * 3 2 1 6 6 H 1.48497 * 109.47264 * 59.99800 * 3 2 1 7 7 C 1.38888 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.37202 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.40081 * 126.09151 * 359.69508 * 9 7 2 11 11 C 1.31437 * 108.35516 * 180.26037 * 10 9 7 12 12 O 1.35853 * 125.80390 * 180.02562 * 11 10 9 13 13 C 1.40536 * 108.40237 * 359.97438 * 11 10 9 14 14 F 1.35093 * 126.05873 * 180.02562 * 13 11 10 15 15 C 1.35791 * 107.88950 * 0.02562 * 13 11 10 16 16 O 1.35768 * 126.23490 * 180.02562 * 15 13 11 17 17 H 0.96998 * 119.99949 * 0.02562 * 1 2 3 18 18 H 0.96707 * 114.00065 * 269.97633 * 12 11 10 19 19 H 0.96705 * 113.99265 * 269.95534 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3464 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0084 -1.2028 0.0005 8 1 3.0883 -1.2028 0.0010 9 7 1.3223 -2.3910 0.0005 10 7 -0.0706 -2.5396 0.0061 11 6 -0.3498 -3.8240 0.0098 12 8 -1.5953 -4.3665 0.0151 13 6 0.8590 -4.5408 0.0061 14 9 0.9859 -5.8857 0.0078 15 6 1.8769 -3.6420 0.0007 16 8 3.2033 -3.9318 -0.0046 17 1 -0.4850 0.8400 -0.0004 18 1 -1.9528 -4.5220 0.9001 19 1 3.5914 -4.0139 0.8774 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220339.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:00 Heat of formation + Delta-G solvation = -74.157933 kcal Electronic energy + Delta-G solvation = -11453.958487 eV Core-core repulsion = 8887.922524 eV Total energy + Delta-G solvation = -2566.035963 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.038 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.30911 -41.78897 -38.52958 -37.47119 -35.41846 -32.03562 -29.53400 -26.92956 -23.06098 -22.24808 -20.37995 -19.31950 -18.28477 -17.48998 -17.26390 -16.72451 -15.95615 -15.60183 -15.40105 -14.38932 -14.15707 -13.83361 -13.34712 -12.84659 -12.64164 -12.53303 -12.00716 -11.32132 -10.61232 -10.17999 -9.26135 -8.65998 -6.49131 0.87954 1.37705 1.49156 1.58910 1.61248 1.83256 2.29345 2.82409 2.88158 3.77077 4.18243 4.34925 4.73385 5.04558 5.60699 5.79218 6.31495 6.54960 6.86486 7.09177 7.27173 8.31150 Molecular weight = 188.04amu Principal moments of inertia in cm(-1) A = 0.057054 B = 0.014377 C = 0.011554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.643049 B = 1947.080402 C = 2422.749365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C -0.001 4.001 3 Si 1.027 2.973 4 H -0.242 1.242 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.333 4.333 8 H 0.148 0.852 9 N -0.136 5.136 10 N -0.285 5.285 11 C 0.147 3.853 12 O -0.463 6.463 13 C -0.132 4.132 14 F -0.136 7.136 15 C 0.108 3.892 16 O -0.455 6.455 17 H 0.288 0.712 18 H 0.402 0.598 19 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 0.633 3.472 5.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.215 4.215 3 Si 0.845 3.155 4 H -0.165 1.165 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.466 4.466 8 H 0.165 0.835 9 N 0.085 4.915 10 N -0.130 5.130 11 C -0.045 4.045 12 O -0.268 6.268 13 C -0.167 4.167 14 F -0.116 7.116 15 C -0.064 4.064 16 O -0.259 6.259 17 H 0.098 0.902 18 H 0.259 0.741 19 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.187 1.733 2.254 4.271 hybrid contribution 0.342 -0.730 0.962 1.255 sum 3.529 1.003 3.216 4.879 Atomic orbital electron populations 1.70362 1.08398 1.30384 1.33636 1.27024 0.96642 1.04406 0.93476 0.84415 0.78907 0.73425 0.78788 1.16518 1.19380 1.18808 1.20935 0.93462 0.80182 1.52015 0.83524 1.45107 1.03111 1.04573 1.38685 1.78508 0.90256 1.13649 1.30612 1.19892 0.84917 0.89808 1.09932 1.84781 1.26453 1.80980 1.34556 1.16861 0.93244 0.77544 1.29084 1.91262 1.96488 1.27511 1.96341 1.17918 0.84427 0.84821 1.19225 1.84836 1.16209 1.90226 1.34582 0.90186 0.74120 0.74609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.26 11.81 21.65 0.26 -42.00 13 2 C 0.00 -0.03 5.50 84.91 0.47 0.43 13 3 Si 1.03 35.09 29.55 68.60 2.03 37.12 13 4 H -0.24 -7.54 7.11 99.48 0.71 -6.84 13 5 H -0.27 -9.08 7.11 99.48 0.71 -8.37 13 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 13 7 C -0.33 -16.82 10.18 84.01 0.86 -15.96 13 8 H 0.15 6.57 7.83 -2.91 -0.02 6.55 13 9 N -0.14 -7.38 3.74 -301.13 -1.13 -8.51 13 10 N -0.29 -16.25 10.42 -170.14 -1.77 -18.02 13 11 C 0.15 7.70 8.46 85.31 0.72 8.42 13 12 O -0.46 -20.63 13.66 -91.90 -1.26 -21.88 13 13 C -0.13 -6.76 8.01 22.26 0.18 -6.58 13 14 F -0.14 -6.52 17.32 44.97 0.78 -5.74 13 15 C 0.11 5.43 7.97 83.34 0.66 6.09 13 16 O -0.46 -18.98 13.57 -90.95 -1.23 -20.22 13 17 H 0.29 13.65 8.31 -92.71 -0.77 12.88 13 18 H 0.40 13.01 9.06 -74.05 -0.67 12.34 13 19 H 0.40 11.88 9.06 -74.05 -0.67 11.21 13 Total: -1.00 -67.57 195.77 0.55 -67.02 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.01 Total: 19.84 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 2.89 Total: -7.61 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -2.64 Total: -68.53 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.49 Total: -42.10 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.78 Total: -5.74 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -67.57 0.55 -67.02 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220339.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.138 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds