Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.60216 * 305.32092 * 10 9 7 12 12 C 1.55154 * 109.60360 * 65.46171 * 10 9 7 13 13 S 1.83991 * 100.91203 * 161.37175 * 12 10 9 14 14 C 1.83396 * 95.84987 * 324.65033 * 13 12 10 15 15 C 1.52940 * 109.60699 * 185.00032 * 10 9 7 16 16 H 1.08996 * 108.88848 * 89.31738 * 15 10 9 17 17 N 1.46899 * 108.88276 * 330.76168 * 15 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09003 * 111.12917 * 279.27724 * 12 10 9 22 22 H 1.08994 * 111.13224 * 43.45880 * 12 10 9 23 23 H 1.09003 * 110.33921 * 260.88121 * 14 13 12 24 24 H 1.08997 * 110.43344 * 138.66435 * 14 13 12 25 25 H 1.00906 * 110.99613 * 180.02562 * 17 15 10 26 26 H 1.00899 * 111.00371 * 303.95305 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9340 -3.5543 -0.8373 12 6 3.0447 -3.6634 1.3301 13 16 3.6918 -5.3857 1.3458 14 6 2.2151 -6.1472 0.5694 15 6 1.4876 -4.9848 -0.1250 16 1 1.3705 -5.2255 -1.1816 17 7 0.1566 -4.8294 0.4768 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 3.8581 -2.9384 1.3001 22 1 2.3902 -3.4818 2.1825 23 1 1.5751 -6.5942 1.3302 24 1 2.5142 -6.8979 -0.1620 25 1 -0.3720 -5.6865 0.4115 26 1 0.2267 -4.5203 1.4347 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261221981.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = -12.204692 kcal Electronic energy + Delta-G solvation = -9873.557306 eV Core-core repulsion = 8077.680019 eV Total energy + Delta-G solvation = -1795.877287 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.46721 -33.07284 -31.13341 -28.65703 -26.71276 -24.37013 -21.86855 -18.63509 -16.96954 -15.83071 -15.55345 -14.55569 -14.17141 -13.78743 -13.41943 -12.81749 -12.07082 -11.79390 -11.44145 -11.36658 -10.82509 -10.68742 -10.50612 -10.17465 -9.75446 -9.06693 -9.00815 -8.32555 -8.19888 -7.40288 -5.96348 -3.99311 2.24815 2.76014 3.34298 3.39235 3.41371 4.47132 4.87735 4.99211 5.30676 5.37181 5.39304 5.54922 5.75223 5.87611 6.16243 6.45173 6.70336 6.93492 7.52550 7.76241 7.79878 7.89560 8.08641 8.44932 9.08564 9.64271 11.13893 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.059942 B = 0.011406 C = 0.009965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.005644 B = 2454.240381 C = 2809.096985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.053 3.947 10 C -0.083 4.083 11 H 0.075 0.925 12 C -0.031 4.031 13 S -0.347 6.347 14 C -0.098 4.098 15 C 0.088 3.912 16 H 0.086 0.914 17 N -0.825 5.825 18 H 0.260 0.740 19 H 0.027 0.973 20 H 0.025 0.975 21 H 0.105 0.895 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.329 0.671 26 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -9.106 1.511 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.014 3.986 10 C -0.104 4.104 11 H 0.093 0.907 12 C -0.179 4.179 13 S -0.121 6.121 14 C -0.249 4.249 15 C -0.025 4.025 16 H 0.104 0.896 17 N -0.354 5.354 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.043 0.957 21 H 0.123 0.877 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.141 0.859 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.276 -8.920 1.347 9.598 hybrid contribution -0.210 0.581 0.295 0.685 sum 3.066 -8.339 1.642 9.035 Atomic orbital electron populations 1.69969 1.05933 1.26533 1.50475 1.24979 0.94770 0.99000 0.95409 0.86743 0.79648 0.83531 0.78564 1.20326 1.21349 1.20333 1.21310 0.92853 0.91380 1.51003 0.92961 1.18900 0.92461 0.88600 0.98596 1.22214 0.97907 0.95028 0.95244 0.90695 1.24495 1.01803 0.90108 1.01465 1.87555 1.29364 1.12820 1.82364 1.24990 0.96743 1.01652 1.01508 1.22117 0.88853 0.92609 0.98890 0.89602 1.58983 1.15449 1.36117 1.24890 0.93035 0.95468 0.95665 0.87686 0.89569 0.90149 0.89114 0.85909 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 7 C -0.53 -14.34 8.62 -34.44 -0.30 -14.63 15 8 H 0.05 1.38 7.39 -52.49 -0.39 0.99 15 9 C 0.05 1.30 3.60 -27.88 -0.10 1.20 15 10 C -0.08 -1.64 2.36 -89.51 -0.21 -1.85 15 11 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 12 C -0.03 -0.58 6.32 38.30 0.24 -0.34 15 13 S -0.35 -5.82 23.23 -107.50 -2.50 -8.32 15 14 C -0.10 -1.40 7.08 37.53 0.27 -1.13 15 15 C 0.09 1.43 3.53 -67.37 -0.24 1.20 15 16 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 17 N -0.83 -13.12 7.68 -4.38 -0.03 -13.16 15 18 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 19 H 0.03 0.70 6.97 -51.93 -0.36 0.34 15 20 H 0.03 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.10 1.99 7.84 -51.93 -0.41 1.58 15 22 H 0.09 1.60 8.09 -51.93 -0.42 1.18 15 23 H 0.08 1.04 7.86 -51.93 -0.41 0.63 15 24 H 0.09 1.16 8.14 -51.93 -0.42 0.73 15 25 H 0.33 4.21 8.96 -39.29 -0.35 3.86 15 26 H 0.34 5.52 8.26 -39.29 -0.32 5.20 15 LS Contribution 228.27 15.07 3.44 3.44 Total: -1.00 -29.04 228.27 -7.30 -36.33 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.49 Total: 4.91 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.44 Total: -13.96 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.70 Total: -38.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -2.50 Total: -8.32 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.04 -7.30 -36.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221981.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.129 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds