Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.29939 * 2 1 4 4 S 1.83388 * 110.42953 * 237.77067 * 2 1 3 5 5 C 1.83985 * 95.85178 * 260.82677 * 4 2 1 6 6 C 1.54997 * 100.82266 * 324.57721 * 5 4 2 7 7 C 1.52945 * 109.03996 * 41.60814 * 6 5 4 8 8 N 1.46899 * 108.88889 * 90.43956 * 7 6 5 9 9 C 1.50704 * 108.88576 * 208.99389 * 7 6 5 10 10 H 1.07999 * 119.99817 * 121.48904 * 9 7 6 11 11 C 1.37878 * 120.00059 * 301.48679 * 9 7 6 12 12 N 1.31511 * 120.00025 * 200.72041 * 11 9 7 13 13 Si 1.86800 * 119.99983 * 20.72269 * 11 9 7 14 14 H 1.48489 * 109.47150 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.47108 * 300.00131 * 13 11 9 16 16 H 1.48501 * 109.47097 * 59.99838 * 13 11 9 17 17 H 1.09002 * 109.47163 * 297.82661 * 1 2 3 18 18 H 1.08997 * 109.47607 * 57.83052 * 1 2 3 19 19 H 1.09000 * 109.47098 * 177.83410 * 1 2 3 20 20 H 1.08992 * 111.13244 * 82.56019 * 5 4 2 21 21 H 1.09006 * 111.13391 * 206.74208 * 5 4 2 22 22 H 1.09000 * 109.65643 * 281.60014 * 6 5 4 23 23 H 1.08995 * 109.47252 * 161.50355 * 6 5 4 24 24 H 1.00898 * 111.00044 * 52.42925 * 8 7 6 25 25 H 1.00898 * 111.00266 * 176.38098 * 8 7 6 26 26 H 0.97003 * 120.00069 * 354.92381 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 16 2.1701 -0.9165 -1.4537 5 6 2.5090 -2.4844 -0.5527 6 6 2.9670 -1.9364 0.8229 7 6 2.0643 -0.7673 1.2199 8 7 0.9267 -1.2855 1.9914 9 6 2.8493 0.1822 2.0880 10 1 2.9720 1.2123 1.7878 11 6 3.4106 -0.2643 3.2656 12 7 3.7315 0.5947 4.2082 13 14 3.7156 -2.0893 3.5219 14 1 4.3232 -2.3066 4.8592 15 1 2.4272 -2.8230 3.4378 16 1 4.6392 -2.5891 2.4719 17 1 -0.3633 0.4797 0.9088 18 1 -0.3634 0.5471 -0.8698 19 1 -0.3633 -1.0269 -0.0388 20 1 1.6051 -3.0858 -0.4569 21 1 3.3061 -3.0504 -1.0349 22 1 3.9999 -1.5945 0.7559 23 1 2.8936 -2.7255 1.5712 24 1 1.2418 -1.8605 2.7583 25 1 0.3403 -0.5333 2.3206 26 1 3.6420 1.5472 4.0474 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256801.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 6.398963 kcal Electronic energy + Delta-G solvation = -10378.434795 eV Core-core repulsion = 8583.364223 eV Total energy + Delta-G solvation = -1795.070572 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.47579 -32.41112 -31.24685 -29.76665 -26.42771 -23.06799 -22.51044 -18.96333 -17.54642 -15.87467 -15.45108 -14.45643 -13.89249 -13.35517 -12.82601 -12.52658 -12.37889 -12.05898 -11.59217 -11.38691 -10.66990 -10.52475 -10.19880 -10.16695 -9.59693 -9.32272 -9.10535 -8.48684 -7.61111 -7.08269 -6.59850 -4.31547 2.60900 3.02958 3.14671 3.26157 3.44990 4.24943 5.04661 5.41855 5.58640 5.60918 5.75493 5.88252 6.01670 6.15514 6.28910 6.41021 6.63337 6.70154 6.90042 6.99279 7.73802 8.11792 8.30830 8.45785 8.71517 9.38786 10.70452 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.049414 B = 0.018685 C = 0.016457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.507348 B = 1498.190123 C = 1700.962086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.003 3.997 3 H 0.092 0.908 4 S -0.343 6.343 5 C -0.053 4.053 6 C -0.127 4.127 7 C 0.209 3.791 8 N -0.852 5.852 9 C -0.627 4.627 10 H 0.059 0.941 11 C 0.032 3.968 12 N -0.892 5.892 13 Si 1.053 2.947 14 H -0.293 1.293 15 H -0.277 1.277 16 H -0.281 1.281 17 H 0.059 0.941 18 H 0.039 0.961 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.327 0.673 25 H 0.332 0.668 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 -5.018 -5.347 8.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.126 4.126 3 H 0.110 0.890 4 S -0.116 6.116 5 C -0.201 4.201 6 C -0.166 4.166 7 C 0.116 3.884 8 N -0.385 5.385 9 C -0.667 4.667 10 H 0.078 0.922 11 C -0.175 4.175 12 N -0.524 5.524 13 Si 0.885 3.115 14 H -0.221 1.221 15 H -0.205 1.205 16 H -0.207 1.207 17 H 0.078 0.922 18 H 0.059 0.941 19 H 0.087 0.913 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.216 -6.162 -6.088 9.239 hybrid contribution -0.112 1.446 0.821 1.667 sum -3.327 -4.716 -5.266 7.813 Atomic orbital electron populations 1.21732 0.93574 1.02484 0.99983 1.23691 0.97619 1.00152 0.91108 0.88970 1.87224 1.85633 1.16063 1.22713 1.24169 1.03250 0.95261 0.97449 1.23050 1.01668 0.97765 0.94130 1.19069 0.87942 0.90492 0.90866 1.59912 1.22774 1.26262 1.29527 1.22619 1.38565 0.97288 1.08235 0.92241 1.25816 0.93469 1.06491 0.91743 1.70837 1.46301 1.04104 1.31196 0.84151 0.76908 0.74971 0.75479 1.22074 1.20480 1.20739 0.92244 0.94149 0.91310 0.89709 0.89241 0.89980 0.91874 0.85805 0.85569 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.21 37.16 0.30 -1.83 15 2 C 0.00 0.06 3.51 -26.37 -0.09 -0.03 15 3 H 0.09 2.06 7.30 -51.93 -0.38 1.68 15 4 S -0.34 -6.81 22.66 -107.50 -2.44 -9.24 15 5 C -0.05 -0.98 7.52 38.21 0.29 -0.69 15 6 C -0.13 -2.70 3.38 -25.70 -0.09 -2.78 15 7 C 0.21 4.69 0.81 -132.41 -0.11 4.58 15 8 N -0.85 -17.80 7.43 0.08 0.00 -17.80 15 9 C -0.63 -16.64 8.33 -34.44 -0.29 -16.93 15 10 H 0.06 1.73 7.50 -52.49 -0.39 1.34 15 11 C 0.03 0.88 5.36 -17.82 -0.10 0.78 15 12 N -0.89 -26.17 13.70 55.43 0.76 -25.41 15 13 Si 1.05 24.07 23.17 -169.99 -3.94 20.14 15 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 15 H -0.28 -5.73 5.26 56.52 0.30 -5.43 15 16 H -0.28 -6.08 6.25 56.52 0.35 -5.73 15 17 H 0.06 1.04 6.87 -51.93 -0.36 0.68 15 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.07 1.24 7.75 -51.93 -0.40 0.84 15 20 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 21 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.08 1.86 6.98 -51.93 -0.36 1.50 15 23 H 0.06 1.31 4.19 -51.93 -0.22 1.09 15 24 H 0.33 6.99 5.08 -39.29 -0.20 6.79 15 25 H 0.33 6.79 7.27 -39.29 -0.29 6.51 15 26 H 0.27 7.96 8.73 -40.82 -0.36 7.60 15 LS Contribution 208.78 15.07 3.15 3.15 Total: -1.00 -27.71 208.78 -5.71 -33.42 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -3.17 Total: 12.64 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.08 Total: -16.89 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.76 Total: -43.21 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -3.94 Total: 20.14 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -2.44 Total: -9.24 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -27.71 -5.71 -33.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256801.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.821 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds