Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 11 11 F 1.39894 * 109.47157 * 59.99319 * 9 7 2 12 12 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.46836 * 179.97438 * 12 9 7 14 14 C 1.48538 * 111.00040 * 52.60491 * 13 12 9 15 15 C 1.54938 * 103.22933 * 159.72113 * 14 13 12 16 16 C 1.54598 * 102.91908 * 322.58436 * 15 14 13 17 17 C 1.47903 * 110.99879 * 169.99772 * 13 12 9 18 18 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.46737 * 299.99057 * 12 9 7 20 20 H 1.08993 * 109.47411 * 59.99528 * 12 9 7 21 21 H 1.09004 * 110.66424 * 278.15499 * 14 13 12 22 22 H 1.08996 * 110.66944 * 41.27902 * 14 13 12 23 23 H 1.08996 * 110.72252 * 204.22590 * 15 14 13 24 24 H 1.09000 * 110.72625 * 80.93807 * 15 14 13 25 25 H 1.09005 * 110.30427 * 263.04165 * 16 15 14 26 26 H 1.08997 * 110.31224 * 140.87540 * 16 15 14 27 27 H 1.08998 * 109.91602 * 333.50769 * 17 13 12 28 28 H 1.08999 * 109.91777 * 94.60952 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6281 -2.5591 0.8866 11 9 0.4420 -2.5705 -1.1449 12 6 2.2453 -3.6621 -0.0121 13 7 1.5108 -4.9342 -0.0116 14 6 0.5109 -4.9720 -1.1094 15 6 0.2385 -6.4867 -1.2888 16 6 1.6326 -7.1172 -1.0676 17 6 2.4225 -6.0727 -0.2574 18 1 -0.4850 -0.8400 0.0004 19 1 2.8685 -3.6024 -0.9044 20 1 2.8753 -3.6063 0.8755 21 1 -0.4001 -4.4492 -0.8180 22 1 0.9255 -4.5448 -2.0224 23 1 -0.1246 -6.6967 -2.2948 24 1 -0.4691 -6.8427 -0.5400 25 1 2.1205 -7.3015 -2.0248 26 1 1.5429 -8.0452 -0.5029 27 1 3.2890 -5.7381 -0.8277 28 1 2.7455 -6.5012 0.6914 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -59.330079 kcal Electronic energy + Delta-G solvation = -11924.952953 eV Core-core repulsion = 9696.652075 eV Total energy + Delta-G solvation = -2228.300879 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.05964 -38.25499 -33.35327 -31.93590 -28.53253 -27.97909 -24.11280 -21.53601 -20.53404 -20.23116 -17.20140 -15.84664 -15.50601 -14.62378 -13.84455 -13.66436 -13.59741 -13.18910 -12.70031 -12.33980 -11.77542 -11.45428 -11.14065 -10.96097 -10.81552 -10.68692 -10.31309 -10.23172 -10.13164 -9.40637 -8.52420 -8.42755 -7.92357 -6.48049 -4.30534 3.39325 3.43804 3.59718 4.40673 4.56131 4.96025 5.00783 5.20675 5.28937 5.64592 5.75083 5.94732 5.97009 5.98576 6.04331 6.10874 6.28108 6.32952 6.48840 6.53987 6.82150 7.33639 7.42197 7.60435 7.89785 8.27354 8.70460 9.51056 10.91484 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.088456 B = 0.010079 C = 0.009378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.466372 B = 2777.368048 C = 2985.072329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.032 3.968 3 Si 1.077 2.923 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.643 4.643 8 H 0.059 0.941 9 C 0.202 3.798 10 H 0.036 0.964 11 F -0.241 7.241 12 C 0.036 3.964 13 N -0.523 5.523 14 C 0.041 3.959 15 C -0.130 4.130 16 C -0.129 4.129 17 C 0.034 3.966 18 H 0.276 0.724 19 H 0.034 0.966 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -9.878 -1.396 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.176 4.176 3 Si 0.905 3.095 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.681 4.681 8 H 0.077 0.923 9 C 0.166 3.834 10 H 0.054 0.946 11 F -0.223 7.223 12 C -0.092 4.092 13 N -0.248 5.248 14 C -0.087 4.087 15 C -0.168 4.168 16 C -0.167 4.167 17 C -0.094 4.094 18 H 0.087 0.913 19 H 0.052 0.948 20 H 0.097 0.903 21 H 0.107 0.893 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.585 -8.280 -0.911 8.722 hybrid contribution 0.704 -1.623 -0.814 1.948 sum 3.289 -9.904 -1.725 10.577 Atomic orbital electron populations 1.70680 1.06936 1.31602 1.43601 1.25956 0.96431 1.02977 0.92251 0.83440 0.74635 0.74568 0.76895 1.21142 1.21321 1.20778 1.22264 0.94880 0.91399 1.59542 0.92270 1.19226 0.87832 0.93731 0.82633 0.94588 1.92678 1.76288 1.97204 1.56104 1.22862 0.96839 0.88788 1.00755 1.64860 1.13502 1.02853 1.43547 1.23441 0.97284 0.94578 0.93408 1.22597 0.96686 0.96406 1.01108 1.22377 0.96351 0.98392 0.99612 1.22860 0.95047 0.92359 0.99166 0.91280 0.94818 0.90296 0.89287 0.93285 0.91584 0.91211 0.91987 0.91521 0.94258 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.56 55.43 0.75 -26.95 15 2 C 0.03 0.92 5.42 -17.82 -0.10 0.82 15 3 Si 1.08 25.26 29.90 -169.99 -5.08 20.18 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.64 -18.50 8.86 -34.44 -0.30 -18.80 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.20 5.35 2.78 -27.88 -0.08 5.27 15 10 H 0.04 1.01 8.01 -51.93 -0.42 0.59 15 11 F -0.24 -6.60 12.21 2.25 0.03 -6.57 15 12 C 0.04 0.79 4.88 -3.83 -0.02 0.77 15 13 N -0.52 -10.26 5.40 -230.45 -1.24 -11.50 15 14 C 0.04 0.77 4.69 -1.89 -0.01 0.76 15 15 C -0.13 -1.90 7.06 -24.87 -0.18 -2.07 15 16 C -0.13 -1.73 6.93 -25.37 -0.18 -1.90 15 17 C 0.03 0.54 6.70 -2.75 -0.02 0.52 15 18 H 0.28 8.64 6.59 -40.82 -0.27 8.37 15 19 H 0.03 0.76 7.81 -51.93 -0.41 0.35 15 20 H 0.08 1.68 8.14 -51.93 -0.42 1.26 15 21 H 0.09 1.84 6.97 -51.93 -0.36 1.47 15 22 H 0.05 0.99 7.36 -51.93 -0.38 0.61 15 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.04 0.62 7.57 -51.93 -0.39 0.22 15 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 230.61 15.07 3.48 3.48 Total: -1.00 -30.79 230.61 -6.92 -37.70 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.97 Total: -1.70 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.88 Total: -14.63 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.49 Total: -38.45 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.03 Total: -6.57 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.79 -6.92 -37.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.626 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds