Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46787 * 2 1 4 4 C 1.47963 * 110.99914 * 189.99837 * 3 2 1 5 5 C 1.53928 * 86.18354 * 222.41618 * 4 3 2 6 6 C 1.52996 * 113.73497 * 138.07605 * 5 4 3 7 7 H 1.09004 * 109.47066 * 60.00267 * 6 5 4 8 8 F 1.39900 * 109.47242 * 300.00133 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.47955 * 111.00055 * 90.63987 * 3 2 1 18 18 H 1.09000 * 109.47201 * 60.00095 * 1 2 3 19 19 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47449 * 299.99934 * 1 2 3 21 21 H 1.08994 * 109.47138 * 240.00403 * 2 1 3 22 22 H 1.08994 * 109.46902 * 119.99589 * 2 1 3 23 23 H 1.09004 * 113.75727 * 108.09696 * 4 3 2 24 24 H 1.09003 * 113.86098 * 336.74802 * 4 3 2 25 25 H 1.09001 * 113.73627 * 269.25601 * 5 4 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 27 27 H 1.08999 * 113.76254 * 23.26399 * 17 3 2 28 28 H 1.08999 * 113.76403 * 251.89592 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4789 1.4315 -0.2398 5 6 3.5229 2.4998 0.8675 6 6 4.6993 2.3385 1.8324 7 1 5.6356 2.4071 1.2785 8 9 4.6195 1.0910 2.4607 9 6 4.6493 3.4281 2.8722 10 1 3.8573 4.1621 2.8476 11 6 5.6110 3.4844 3.8587 12 7 5.5642 4.4321 4.7693 13 14 6.9803 2.2146 3.9016 14 1 8.1309 2.7001 3.0980 15 1 7.4127 2.0002 5.3060 16 1 6.4859 0.9341 3.3349 17 6 2.2108 1.8798 1.3812 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5137 -0.8900 22 1 1.8932 -0.5137 0.8900 23 1 3.7501 1.8095 -1.2256 24 1 3.9980 0.5087 0.0193 25 1 3.4132 3.5194 0.4982 26 1 6.2410 4.4719 5.4630 27 1 2.3574 1.0875 2.1152 28 1 1.4690 2.6159 1.6907 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -20.095722 kcal Electronic energy + Delta-G solvation = -11855.148262 eV Core-core repulsion = 9628.548712 eV Total energy + Delta-G solvation = -2226.599549 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.30286 -39.19432 -33.11801 -32.30241 -29.16672 -25.84301 -25.62977 -22.58622 -20.62724 -18.73269 -17.01637 -15.77357 -15.52169 -15.02434 -14.49027 -14.03114 -13.26337 -12.94950 -12.72124 -12.33034 -12.16830 -11.84843 -11.63309 -11.00092 -10.92581 -10.42771 -10.40670 -10.09016 -9.86766 -9.10219 -8.96414 -8.68197 -8.39311 -6.20194 -4.31446 3.28265 3.38035 3.51485 4.33200 4.38870 5.02250 5.15360 5.24776 5.27241 5.46804 5.64066 5.83751 5.89719 5.94211 6.02948 6.08757 6.16264 6.30749 6.36754 6.48539 6.70513 6.78675 7.27274 7.42186 7.52886 8.31574 8.80655 9.40380 10.91106 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.070630 B = 0.011022 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.334725 B = 2539.791810 C = 2656.859191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.014 3.986 3 N -0.486 5.486 4 C -0.003 4.003 5 C -0.118 4.118 6 C 0.185 3.815 7 H 0.038 0.962 8 F -0.241 7.241 9 C -0.555 4.555 10 H 0.083 0.917 11 C 0.083 3.917 12 N -0.887 5.887 13 Si 0.867 3.133 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.240 1.240 17 C 0.017 3.983 18 H 0.058 0.942 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.267 0.733 27 H 0.077 0.923 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -7.407 -8.018 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 N -0.208 5.208 4 C -0.131 4.131 5 C -0.138 4.138 6 C 0.148 3.852 7 H 0.056 0.944 8 F -0.222 7.222 9 C -0.592 4.592 10 H 0.101 0.899 11 C -0.121 4.121 12 N -0.523 5.523 13 Si 0.693 3.307 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.163 1.163 17 C -0.111 4.111 18 H 0.077 0.923 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.923 -7.056 -8.288 11.946 hybrid contribution 1.248 -1.088 0.767 1.825 sum -3.675 -8.144 -7.521 11.679 Atomic orbital electron populations 1.21647 0.95118 1.00745 1.02295 1.22600 0.96553 0.91589 1.00758 1.68486 1.14400 1.18172 1.19772 1.24025 0.89564 0.99416 1.00132 1.23423 0.95918 0.99337 0.95089 1.19416 0.94364 0.79052 0.92327 0.94394 1.92685 1.97231 1.47237 1.85036 1.21257 1.14022 1.12155 1.11786 0.89890 1.25001 0.97511 0.95080 0.94549 1.69914 1.34938 1.32644 1.14841 0.87136 0.81574 0.84153 0.77842 1.20597 1.21337 1.16303 1.23907 0.97278 0.99743 0.90164 0.92321 0.92962 0.92730 0.91681 0.93881 0.90019 0.91462 0.87748 0.92347 0.90493 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.22 37.16 0.38 -1.38 15 2 C 0.01 0.20 5.52 -3.83 -0.02 0.18 15 3 N -0.49 -8.18 6.16 -238.29 -1.47 -9.64 15 4 C 0.00 -0.04 7.43 -2.77 -0.02 -0.06 15 5 C -0.12 -2.36 3.71 -89.69 -0.33 -2.69 15 6 C 0.19 4.38 2.60 -27.88 -0.07 4.30 15 7 H 0.04 0.88 7.58 -51.93 -0.39 0.49 15 8 F -0.24 -5.90 12.64 2.25 0.03 -5.87 15 9 C -0.55 -15.50 9.43 -34.44 -0.32 -15.82 15 10 H 0.08 2.47 7.99 -52.49 -0.42 2.05 15 11 C 0.08 2.40 5.47 -17.82 -0.10 2.30 15 12 N -0.89 -26.92 13.96 55.43 0.77 -26.15 15 13 Si 0.87 21.54 27.07 -169.99 -4.60 16.94 15 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 16 H -0.24 -5.87 5.48 56.52 0.31 -5.56 15 17 C 0.02 0.33 7.39 -2.77 -0.02 0.31 15 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 22 H 0.04 0.65 7.38 -51.93 -0.38 0.27 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.07 1.14 7.69 -51.93 -0.40 0.75 15 25 H 0.10 2.06 8.14 -51.93 -0.42 1.64 15 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 27 H 0.08 1.53 6.46 -51.93 -0.34 1.20 15 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 LS Contribution 233.64 15.07 3.52 3.52 Total: -1.00 -29.63 233.64 -6.37 -36.00 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -4.11 Total: -1.94 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.51 Total: -12.86 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.69 Total: -35.79 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.03 Total: -5.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.60 Total: 16.94 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.63 -6.37 -36.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.902 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds