Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48566 * 111.00116 * 2 1 4 4 C 1.54383 * 104.59417 * 159.04307 * 3 2 1 5 5 H 1.09004 * 110.32373 * 217.25603 * 4 3 2 6 6 F 1.39897 * 110.32275 * 95.04271 * 4 3 2 7 7 C 1.54261 * 105.05972 * 336.14506 * 4 3 2 8 8 H 1.09007 * 110.41032 * 118.93826 * 7 4 3 9 9 C 1.52997 * 110.32744 * 241.10544 * 7 4 3 10 10 C 1.50701 * 109.47212 * 182.09139 * 9 7 4 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.48563 * 111.00366 * 115.42030 * 2 1 3 19 19 H 1.09000 * 109.46712 * 304.58362 * 1 2 3 20 20 H 1.09004 * 109.47064 * 64.57717 * 1 2 3 21 21 H 1.08990 * 109.47283 * 184.58132 * 1 2 3 22 22 H 1.08995 * 110.41165 * 277.81728 * 3 2 1 23 23 H 1.09000 * 110.41066 * 40.14477 * 3 2 1 24 24 H 1.09002 * 109.47153 * 62.09141 * 9 7 4 25 25 H 1.09001 * 109.46832 * 302.09331 * 9 7 4 26 26 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 27 27 H 1.08998 * 110.40656 * 82.17417 * 18 2 1 28 28 H 1.09000 * 110.40398 * 319.74085 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 0.5344 5 1 3.6938 2.0995 1.1700 6 9 4.3481 1.1534 -0.5282 7 6 3.4433 -0.0539 1.3585 8 1 4.1485 -0.7702 0.9367 9 6 3.7948 0.2399 2.8182 10 6 3.8396 -1.0515 3.5938 11 1 3.6380 -1.9881 3.0954 12 6 4.1391 -1.0372 4.9397 13 7 4.3851 0.1032 5.5465 14 14 4.1953 -2.6379 5.9009 15 1 5.5710 -3.1952 5.8543 16 1 3.8127 -2.3813 7.3127 17 1 3.2469 -3.6098 5.2999 18 6 2.0015 -0.5953 1.2526 19 1 -0.3633 0.5833 0.8461 20 1 -0.3633 0.4412 -0.9282 21 1 -0.3633 -1.0243 0.0821 22 1 2.0079 1.7916 -1.0120 23 1 1.4086 2.0217 0.6586 24 1 3.0388 0.8964 3.2490 25 1 4.7689 0.7267 2.8665 26 1 4.5954 0.1132 6.4934 27 1 2.0078 -1.6831 1.1837 28 1 1.4098 -0.2713 2.1088 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273973.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = -59.643617 kcal Electronic energy + Delta-G solvation = -11760.439837 eV Core-core repulsion = 9532.125363 eV Total energy + Delta-G solvation = -2228.314475 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.02411 -38.19434 -33.68332 -31.69048 -28.95477 -26.76208 -25.01494 -22.35075 -20.86096 -19.51187 -16.69503 -15.66799 -15.51699 -14.68876 -14.47338 -14.16679 -13.58946 -13.49608 -12.49333 -12.32821 -11.94321 -11.60719 -11.37399 -11.08165 -10.90510 -10.68002 -10.38610 -10.10393 -9.94951 -9.38721 -9.07625 -8.41782 -8.19099 -6.05766 -4.08409 3.29637 3.36076 3.39112 4.34763 4.41699 4.84159 5.09223 5.20697 5.30817 5.48671 5.56764 5.66909 5.79000 5.90280 5.99291 6.14446 6.38548 6.52889 6.69979 6.81349 7.18939 7.29818 7.55562 7.66890 7.91689 8.33252 8.97243 9.56244 11.05559 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.049139 B = 0.010880 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.677482 B = 2573.000904 C = 2879.759760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.009 3.991 4 C 0.083 3.917 5 H 0.090 0.910 6 F -0.214 7.214 7 C -0.107 4.107 8 H 0.081 0.919 9 C 0.030 3.970 10 C -0.519 4.519 11 H 0.058 0.942 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.049 3.951 19 H 0.028 0.972 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.080 0.920 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 1.558 -7.755 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.120 4.120 4 C 0.047 3.953 5 H 0.108 0.892 6 F -0.195 7.195 7 C -0.126 4.126 8 H 0.099 0.901 9 C -0.007 4.007 10 C -0.557 4.557 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.078 4.078 19 H 0.046 0.954 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.442 1.323 -8.087 9.837 hybrid contribution -0.243 -0.370 1.319 1.391 sum -5.684 0.953 -6.768 8.889 Atomic orbital electron populations 1.22473 0.88584 1.01876 1.00453 1.65436 1.07767 1.14383 1.37008 1.23689 0.95326 0.91384 1.01566 1.22561 0.86275 1.01194 0.85305 0.89202 1.92766 1.69568 1.97665 1.59530 1.22658 0.96565 0.94178 0.99233 0.90053 1.19206 0.96969 0.97414 0.87160 1.21172 1.47556 0.93108 0.93848 0.92423 1.25017 0.95249 0.96230 0.97886 1.69956 1.47770 1.25068 1.10675 0.86579 0.78436 0.83761 0.79170 1.20588 1.21251 1.19829 1.23134 0.95303 1.00079 0.89283 0.95375 0.91834 0.91371 0.89745 0.92570 0.96355 0.96029 0.92922 0.90187 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.53 60.06 0.57 0.78 15 2 N -0.52 -8.81 5.66 -238.23 -1.35 -10.16 15 3 C 0.01 0.14 6.29 -2.18 -0.01 0.13 15 4 C 0.08 1.53 4.50 -25.35 -0.11 1.42 15 5 H 0.09 1.59 7.71 -51.93 -0.40 1.19 15 6 F -0.21 -4.16 17.10 2.25 0.04 -4.12 15 7 C -0.11 -2.24 2.89 -89.24 -0.26 -2.50 15 8 H 0.08 1.79 8.05 -51.92 -0.42 1.37 15 9 C 0.03 0.75 4.15 -27.88 -0.12 0.63 15 10 C -0.52 -14.25 8.67 -34.44 -0.30 -14.55 15 11 H 0.06 1.54 7.68 -52.49 -0.40 1.14 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -26.43 13.29 55.43 0.74 -25.69 15 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 18 C 0.05 0.94 5.53 -2.18 -0.01 0.93 15 19 H 0.03 0.37 7.97 -51.93 -0.41 -0.04 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 1.23 8.12 -51.93 -0.42 0.81 15 23 H 0.06 0.83 7.90 -51.93 -0.41 0.42 15 24 H 0.02 0.48 8.05 -51.93 -0.42 0.06 15 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 27 H 0.08 1.53 8.14 -51.93 -0.42 1.10 15 28 H 0.05 1.07 7.63 -51.93 -0.40 0.68 15 LS Contribution 237.89 15.07 3.58 3.58 Total: -1.00 -29.28 237.89 -6.45 -35.74 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -4.11 Total: -4.05 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.34 Total: -11.65 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.61 Total: -35.85 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.28 -6.45 -35.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273973.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.907 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds