Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.47259 * 270.00164 * 3 2 1 5 5 H 1.48502 * 109.47178 * 29.99830 * 3 2 1 6 6 H 1.48499 * 109.47090 * 150.00069 * 3 2 1 7 7 C 1.37879 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99444 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46893 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.59868 * 54.29899 * 10 9 7 12 12 C 1.55150 * 109.60429 * 293.97650 * 10 9 7 13 13 S 1.83988 * 100.90950 * 198.81278 * 12 10 9 14 14 C 1.83400 * 95.85127 * 35.35198 * 13 12 10 15 15 C 1.52942 * 109.60261 * 174.62183 * 10 9 7 16 16 H 1.09001 * 108.88636 * 270.64198 * 15 10 9 17 17 N 1.46901 * 108.88526 * 29.05582 * 15 10 9 18 18 H 0.97000 * 120.00038 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47146 * 59.99359 * 9 7 2 20 20 H 1.08992 * 109.47244 * 299.99295 * 9 7 2 21 21 H 1.09002 * 111.13278 * 316.72270 * 12 10 9 22 22 H 1.08994 * 111.13447 * 80.86335 * 12 10 9 23 23 H 1.08999 * 110.34472 * 99.12674 * 14 13 12 24 24 H 1.09000 * 110.34226 * 221.27580 * 14 13 12 25 25 H 1.00907 * 110.99871 * 180.02562 * 17 15 10 26 26 H 1.00896 * 110.99965 * 303.94737 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5782 -3.1811 -0.8346 12 6 3.6357 -3.3249 1.3348 13 16 4.8077 -4.7432 1.3468 14 6 6.1968 -3.8446 0.5552 15 6 5.5450 -2.6421 -0.1366 16 1 5.8049 -2.6643 -1.1950 17 7 6.0796 -1.4082 0.4548 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6802 0.8888 20 1 3.8746 -0.6800 -0.8911 21 1 3.8110 -2.6631 2.1830 22 1 2.6017 -3.6691 1.3151 23 1 6.9092 -3.5087 1.3087 24 1 6.6927 -4.4824 -0.1765 25 1 7.0856 -1.3786 0.3819 26 1 5.6626 -0.5935 0.0300 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291176.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -28.182332 kcal Electronic energy + Delta-G solvation = -9917.902303 eV Core-core repulsion = 8121.332174 eV Total energy + Delta-G solvation = -1796.570129 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01030 -34.98956 -32.94036 -30.74544 -28.68239 -25.89903 -23.29235 -20.11489 -19.16560 -17.41866 -17.06430 -16.58125 -15.87653 -15.29408 -14.71078 -14.40368 -14.23774 -13.42435 -13.20159 -12.80913 -12.68388 -12.39496 -12.08002 -11.67408 -11.65001 -11.18091 -10.86794 -10.68578 -9.53676 -8.68880 -8.25237 -6.29135 0.98565 1.38151 1.41091 1.43670 1.53386 2.39602 3.10891 3.51609 3.75556 3.95011 4.02214 4.29242 4.42057 4.66038 4.73577 4.86321 4.96404 5.02004 5.24882 5.55173 5.68534 6.21752 6.32003 6.65361 6.80371 7.35020 8.91418 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.057650 B = 0.012572 C = 0.010803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.573525 B = 2226.695064 C = 2591.308706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.236 1.236 7 C -0.526 4.526 8 H 0.031 0.969 9 C 0.008 3.992 10 C -0.072 4.072 11 H 0.064 0.936 12 C -0.024 4.024 13 S -0.349 6.349 14 C -0.045 4.045 15 C 0.092 3.908 16 H 0.060 0.940 17 N -0.850 5.850 18 H 0.264 0.736 19 H 0.039 0.961 20 H 0.021 0.979 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.107 0.893 24 H 0.117 0.883 25 H 0.351 0.649 26 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.564 -2.573 -0.414 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.159 1.159 7 C -0.564 4.564 8 H 0.049 0.951 9 C -0.031 4.031 10 C -0.093 4.093 11 H 0.082 0.918 12 C -0.172 4.172 13 S -0.123 6.123 14 C -0.193 4.193 15 C -0.020 4.020 16 H 0.078 0.922 17 N -0.385 5.385 18 H 0.073 0.927 19 H 0.057 0.943 20 H 0.039 0.961 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.125 0.875 24 H 0.135 0.865 25 H 0.165 0.835 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.032 -3.907 0.668 14.581 hybrid contribution -0.157 1.945 -1.310 2.350 sum 13.875 -1.962 -0.642 14.027 Atomic orbital electron populations 1.70084 1.08492 1.28010 1.52973 1.26032 0.95547 1.03618 0.94277 0.85669 0.79962 0.78048 0.79042 1.19305 1.21834 1.15881 1.21473 0.92077 0.92915 1.49910 0.95106 1.19448 0.93561 0.92888 0.97194 1.21916 0.93699 0.97988 0.95676 0.91777 1.24126 0.98459 0.93884 1.00701 1.87554 1.17303 1.24605 1.82791 1.23988 0.96599 0.96785 1.01956 1.21683 0.92994 0.90303 0.97034 0.92238 1.58911 1.11106 1.03783 1.64705 0.92721 0.94288 0.96068 0.89910 0.90038 0.87492 0.86518 0.83475 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 15 2 C 0.00 0.09 5.47 84.65 0.46 0.55 15 3 Si 0.95 42.70 27.47 68.60 1.88 44.58 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 6 H -0.24 -9.53 6.54 99.48 0.65 -8.88 15 7 C -0.53 -29.22 9.19 25.60 0.24 -28.98 15 8 H 0.03 1.91 7.68 -2.91 -0.02 1.89 15 9 C 0.01 0.35 2.15 29.85 0.06 0.42 15 10 C -0.07 -2.69 2.44 -10.08 -0.02 -2.71 15 11 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 12 C -0.02 -0.91 6.33 72.72 0.46 -0.45 15 13 S -0.35 -11.44 23.23 -56.49 -1.31 -12.75 15 14 C -0.05 -1.12 7.07 72.08 0.51 -0.61 15 15 C 0.09 2.58 3.56 44.99 0.16 2.74 15 16 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 17 N -0.85 -21.98 8.38 -168.36 -1.41 -23.39 15 18 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 19 H 0.04 1.69 6.25 -2.39 -0.01 1.68 15 20 H 0.02 0.87 7.09 -2.39 -0.02 0.85 15 21 H 0.08 3.26 8.08 -2.39 -0.02 3.24 15 22 H 0.08 3.44 7.88 -2.39 -0.02 3.42 15 23 H 0.11 2.41 7.84 -2.39 -0.02 2.39 15 24 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.35 6.65 8.95 -89.69 -0.80 5.85 15 26 H 0.35 9.59 6.70 -89.70 -0.60 8.99 15 Total: -1.00 -63.89 223.21 1.05 -62.84 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.28 Total: 17.04 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 1.87 Total: -29.05 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -1.11 Total: -82.65 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.31 Total: -12.75 kcal Total: -63.89 1.05 -62.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291176.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.655 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds