Wall clock time and date at job start Mon Mar 30 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48488 * 109.47087 * 299.99517 * 3 2 1 6 6 H 1.48500 * 109.47100 * 60.00083 * 3 2 1 7 7 C 1.37875 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99788 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46858 * 300.00269 * 9 7 2 11 11 F 1.39905 * 109.46998 * 59.99381 * 9 7 2 12 12 C 1.52996 * 109.47282 * 180.02562 * 9 7 2 13 13 C 1.53118 * 109.52328 * 180.02562 * 12 9 7 14 14 C 1.53034 * 109.28068 * 177.55504 * 13 12 9 15 15 N 1.46848 * 109.52504 * 300.82023 * 14 13 12 16 16 C 1.46847 * 111.19556 * 61.74015 * 15 14 13 17 17 C 1.53044 * 109.52516 * 298.25761 * 16 15 14 18 18 H 0.97005 * 119.99680 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.52755 * 59.87224 * 12 9 7 20 20 H 1.09001 * 109.50624 * 57.61525 * 13 12 9 21 21 H 1.09002 * 109.53418 * 297.51720 * 13 12 9 22 22 H 1.09000 * 109.46341 * 180.80474 * 14 13 12 23 23 H 1.08999 * 109.46274 * 60.83372 * 14 13 12 24 24 H 1.00901 * 111.00066 * 185.83397 * 15 14 13 25 25 H 1.08999 * 109.46628 * 58.27319 * 16 15 14 26 26 H 1.09003 * 109.46158 * 178.24166 * 16 15 14 27 27 H 1.08996 * 109.50067 * 299.23984 * 17 16 15 28 28 H 1.08999 * 109.53710 * 179.14269 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5566 0.8903 11 9 0.4470 -2.5734 -1.1420 12 6 2.2452 -3.6621 0.0018 13 6 1.4808 -4.9888 0.0012 14 6 2.4791 -6.1471 -0.0591 15 7 3.2935 -6.0303 -1.2755 16 6 4.0730 -4.7858 -1.2751 17 6 3.1222 -3.5868 -1.2511 18 1 -0.4850 0.8401 -0.0004 19 1 2.8731 -3.6035 0.8907 20 1 0.8232 -5.0296 -0.8672 21 1 0.8866 -5.0675 0.9116 22 1 1.9375 -7.0929 -0.0742 23 1 3.1273 -6.1138 0.8165 24 1 3.8943 -6.8332 -1.3869 25 1 4.7137 -4.7588 -0.3937 26 1 4.6891 -4.7428 -2.1733 27 1 2.4905 -3.6054 -2.1392 28 1 3.7007 -2.6631 -1.2354 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293443.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:49 Heat of formation + Delta-G solvation = -92.784599 kcal Electronic energy + Delta-G solvation = -11998.682646 eV Core-core repulsion = 9768.931071 eV Total energy + Delta-G solvation = -2229.751575 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.68595 -39.34196 -35.16954 -33.58553 -31.68118 -29.09077 -25.72069 -23.80196 -22.44334 -20.33279 -18.74132 -17.57298 -16.80027 -16.26829 -15.62317 -15.49026 -15.29940 -14.57800 -14.17891 -13.91623 -13.50188 -13.10203 -12.91281 -12.63000 -12.52324 -12.14653 -12.01597 -11.54914 -11.45144 -10.94468 -10.58424 -10.51582 -9.32484 -8.25425 -6.48575 1.38532 1.39923 1.53032 2.35845 3.06363 3.37670 3.95533 3.99014 4.04407 4.36006 4.48832 4.55210 4.71395 4.75869 4.87843 4.93548 4.97398 5.11524 5.30169 5.39009 5.48804 5.66558 5.81744 6.03159 6.12300 6.62883 6.65473 7.29850 8.83198 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.063504 B = 0.011777 C = 0.010644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.813846 B = 2376.882271 C = 2630.028740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.211 3.789 10 H 0.004 0.996 11 F -0.252 7.252 12 C -0.099 4.099 13 C -0.114 4.114 14 C 0.068 3.932 15 N -0.699 5.699 16 C 0.067 3.933 17 C -0.099 4.099 18 H 0.266 0.734 19 H 0.071 0.929 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.038 0.962 24 H 0.355 0.645 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -8.983 0.320 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.611 4.611 8 H 0.093 0.907 9 C 0.176 3.824 10 H 0.021 0.979 11 F -0.233 7.233 12 C -0.118 4.118 13 C -0.152 4.152 14 C -0.061 4.061 15 N -0.332 5.332 16 C -0.063 4.063 17 C -0.137 4.137 18 H 0.075 0.925 19 H 0.090 0.910 20 H 0.067 0.933 21 H 0.082 0.918 22 H 0.109 0.891 23 H 0.056 0.944 24 H 0.174 0.826 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.097 -8.629 -0.076 11.173 hybrid contribution 0.413 0.919 0.626 1.186 sum 7.510 -7.710 0.550 10.777 Atomic orbital electron populations 1.70157 1.08028 1.28090 1.49380 1.26090 0.95717 1.03842 0.93149 0.85313 0.79215 0.78133 0.77825 1.18087 1.20567 1.19956 1.21935 0.94145 0.91435 1.53553 0.90748 1.19123 0.87374 0.94850 0.81099 0.97864 1.92629 1.77230 1.97526 1.55961 1.21635 0.97033 0.94233 0.98912 1.21626 0.98150 0.94198 1.01233 1.21850 0.95234 0.98237 0.90751 1.60178 1.28652 1.04929 1.39454 1.21889 0.94088 0.89238 1.01046 1.21415 0.97550 0.97723 0.96965 0.92503 0.91038 0.93254 0.91752 0.89095 0.94396 0.82579 0.94532 0.89554 0.93895 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.66 12.95 21.45 0.28 -56.38 15 2 C 0.01 0.74 5.42 84.65 0.46 1.20 15 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 15 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.57 -32.46 8.16 25.60 0.21 -32.25 15 8 H 0.07 3.99 6.73 -2.91 -0.02 3.97 15 9 C 0.21 11.44 2.86 29.85 0.09 11.52 15 10 H 0.00 0.21 8.14 -2.39 -0.02 0.19 15 11 F -0.25 -14.98 15.51 44.97 0.70 -14.28 15 12 C -0.10 -4.18 2.13 -10.72 -0.02 -4.21 15 13 C -0.11 -4.13 5.28 30.65 0.16 -3.97 15 14 C 0.07 1.86 6.55 86.32 0.57 2.43 15 15 N -0.70 -18.87 6.85 -513.99 -3.52 -22.39 15 16 C 0.07 1.94 6.55 86.33 0.57 2.50 15 17 C -0.10 -3.87 4.98 30.65 0.15 -3.72 15 18 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 19 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 20 H 0.05 2.00 7.74 -2.39 -0.02 1.98 15 21 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.04 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.35 7.15 8.90 -89.69 -0.80 6.36 15 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 15 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.04 1.88 7.74 -2.39 -0.02 1.87 15 28 H 0.06 2.48 6.73 -2.39 -0.02 2.46 15 Total: -1.00 -66.30 231.25 2.00 -64.30 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.34 Total: 9.12 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 2.18 Total: -26.50 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -3.24 Total: -78.77 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.70 Total: -14.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.30 2.00 -64.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293443.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.486 kcal (2) G-P(sol) polarization free energy of solvation -66.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds