Wall clock time and date at job start Mon Mar 30 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48504 * 109.47137 * 239.99831 * 3 2 1 5 5 H 1.48503 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47581 * 120.00039 * 3 2 1 7 7 C 1.37881 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99482 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47475 * 60.00108 * 9 7 2 11 11 C 1.52994 * 109.47315 * 299.99734 * 9 7 2 12 12 F 1.39899 * 109.47232 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47073 * 179.97438 * 9 7 2 14 14 H 1.09003 * 110.78009 * 63.24792 * 13 9 7 15 15 C 1.54598 * 110.72373 * 300.00360 * 13 9 7 16 16 C 1.54000 * 105.22213 * 219.73164 * 15 13 9 17 17 N 1.47897 * 107.05672 * 358.72428 * 16 15 13 18 18 C 1.48533 * 105.82381 * 25.32929 * 17 16 15 19 19 H 0.97001 * 120.00624 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46779 * 300.00233 * 11 9 7 21 21 H 1.09003 * 109.47240 * 59.99482 * 11 9 7 22 22 H 1.09002 * 110.31193 * 100.76522 * 15 13 9 23 23 H 1.09000 * 110.30788 * 338.69466 * 15 13 9 24 24 H 1.09000 * 109.91521 * 118.07714 * 16 15 13 25 25 H 1.09002 * 109.91162 * 239.17394 * 16 15 13 26 26 H 1.00899 * 111.00037 * 264.81576 * 17 16 15 27 27 H 1.09003 * 110.66452 * 79.22844 * 18 17 16 28 28 H 1.08995 * 110.66642 * 202.18742 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5572 -0.8897 11 6 0.3710 -2.5800 1.2494 12 9 -0.3281 -3.7918 1.2497 13 6 2.2453 -3.6621 0.0005 14 1 2.8453 -3.6580 0.9106 15 6 3.1504 -3.6081 -1.2517 16 6 3.3028 -5.0722 -1.7039 17 7 2.5516 -5.9046 -0.7394 18 6 1.5087 -5.0169 -0.1645 19 1 -0.4851 0.8400 -0.0004 20 1 0.9974 -2.5220 2.1396 21 1 -0.3373 -1.7515 1.2491 22 1 4.1233 -3.1874 -0.9974 23 1 2.6766 -3.0173 -2.0356 24 1 2.8879 -5.1970 -2.7041 25 1 4.3557 -5.3540 -1.7010 26 1 3.1606 -6.2611 -0.0183 27 1 0.6685 -4.9153 -0.8516 28 1 1.1712 -5.3948 0.8005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261324296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:22 Heat of formation + Delta-G solvation = -68.203815 kcal Electronic energy + Delta-G solvation = -12016.496017 eV Core-core repulsion = 9787.810345 eV Total energy + Delta-G solvation = -2228.685673 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.32384 -38.02420 -33.93422 -31.02073 -28.61961 -26.87132 -24.77738 -21.46894 -20.75492 -19.00657 -16.51637 -16.19191 -15.04547 -14.50960 -14.09582 -13.75911 -13.34115 -13.08476 -12.96028 -12.11523 -11.48090 -11.22839 -11.00649 -10.87918 -10.67365 -10.48210 -10.09899 -9.71179 -9.55895 -9.38768 -8.85113 -8.47613 -8.08532 -6.15184 -4.21806 3.23869 3.29570 3.31510 4.31930 4.83014 5.14074 5.43638 5.52851 5.78250 5.92745 6.15421 6.21854 6.34261 6.43223 6.61239 6.65194 6.71928 6.79662 6.93432 7.01680 7.28732 7.46944 7.76743 7.80359 7.86502 8.27822 8.81788 9.44114 10.91486 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.044391 B = 0.013934 C = 0.011152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.610939 B = 2008.919947 C = 2510.136241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.036 3.964 10 H 0.038 0.962 11 C 0.052 3.948 12 F -0.249 7.249 13 C -0.108 4.108 14 H 0.058 0.942 15 C -0.134 4.134 16 C 0.039 3.961 17 N -0.684 5.684 18 C 0.047 3.953 19 H 0.265 0.735 20 H 0.042 0.958 21 H 0.101 0.899 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.327 0.673 27 H 0.076 0.924 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -5.053 0.117 6.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.017 3.983 10 H 0.056 0.944 11 C -0.003 4.003 12 F -0.231 7.231 13 C -0.128 4.128 14 H 0.076 0.924 15 C -0.173 4.173 16 C -0.091 4.091 17 N -0.310 5.310 18 C -0.081 4.081 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.119 0.881 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.095 0.905 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.440 -5.327 -0.386 6.353 hybrid contribution 1.005 1.651 0.630 2.033 sum 4.445 -3.676 0.244 5.774 Atomic orbital electron populations 1.69816 1.05959 1.27100 1.50227 1.25047 0.94928 0.99428 0.94742 0.86586 0.79568 0.82780 0.78706 1.20163 1.21180 1.20205 1.21035 0.93068 0.89868 1.51119 0.92205 1.19172 0.92597 0.92297 0.94268 0.94420 1.22518 0.96111 0.81651 0.99987 1.92584 1.82177 1.50280 1.98029 1.22729 0.97196 0.96278 0.96631 0.92394 1.22675 0.99737 0.95851 0.98993 1.22764 0.96716 0.92362 0.97290 1.62854 1.14903 1.34810 1.18425 1.23350 0.94679 0.90873 0.99231 0.92527 0.93960 0.88122 0.92494 0.90774 0.91429 0.92741 0.85904 0.90515 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 11.32 55.43 0.63 -24.05 15 2 C 0.06 1.60 5.30 -17.82 -0.09 1.51 15 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.51 -13.39 8.00 -34.44 -0.28 -13.67 15 8 H 0.06 1.54 7.47 -52.49 -0.39 1.15 15 9 C 0.04 0.87 1.61 -91.77 -0.15 0.72 15 10 H 0.04 1.01 8.10 -51.93 -0.42 0.59 15 11 C 0.05 1.25 6.74 37.15 0.25 1.50 15 12 F -0.25 -5.70 14.69 2.25 0.03 -5.67 15 13 C -0.11 -2.23 2.57 -88.67 -0.23 -2.46 15 14 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 15 C -0.13 -2.52 5.67 -25.37 -0.14 -2.66 15 16 C 0.04 0.62 7.52 -2.75 -0.02 0.60 15 17 N -0.68 -11.47 7.51 -109.99 -0.83 -12.29 15 18 C 0.05 0.90 5.46 -1.81 -0.01 0.89 15 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 21 H 0.10 2.63 6.07 -51.93 -0.32 2.32 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.07 1.51 7.81 -51.93 -0.41 1.11 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.33 4.85 8.92 -39.29 -0.35 4.50 15 27 H 0.08 1.58 8.02 -51.93 -0.42 1.16 15 28 H 0.07 1.35 7.18 -51.93 -0.37 0.98 15 LS Contribution 229.82 15.07 3.46 3.46 Total: -1.00 -26.78 229.82 -6.31 -33.09 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.92 Total: 3.46 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.67 Total: -13.56 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.20 Total: -36.35 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.03 Total: -5.67 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.78 -6.31 -33.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.113 kcal (2) G-P(sol) polarization free energy of solvation -26.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds