Wall clock time and date at job start Mon Mar 30 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.49740 * 2 1 4 4 C 1.53047 * 109.49569 * 120.06154 * 2 1 3 5 5 C 1.53028 * 109.53907 * 181.28489 * 4 2 1 6 6 C 1.53191 * 109.34012 * 298.68475 * 5 4 2 7 7 N 1.46922 * 108.77748 * 54.62166 * 6 5 4 8 8 C 1.36929 * 120.63497 * 126.41345 * 7 6 5 9 9 H 1.08004 * 120.00227 * 331.82156 * 8 7 6 10 10 C 1.38814 * 120.00410 * 151.82252 * 8 7 6 11 11 N 1.31621 * 119.99743 * 343.07721 * 10 8 7 12 12 Si 1.86804 * 120.00357 * 163.08069 * 10 8 7 13 13 H 1.48496 * 109.47021 * 59.99782 * 12 10 8 14 14 H 1.48500 * 109.47255 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46880 * 299.99979 * 12 10 8 16 16 C 1.46933 * 118.73590 * 306.39196 * 7 6 5 17 17 H 1.09003 * 109.46516 * 60.00186 * 1 2 3 18 18 H 1.08997 * 109.47506 * 300.00464 * 1 2 3 19 19 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.45968 * 301.34147 * 4 2 1 21 21 H 1.09002 * 109.45516 * 61.29613 * 4 2 1 22 22 H 1.08998 * 109.49649 * 178.71867 * 5 4 2 23 23 H 1.09001 * 109.50162 * 58.65203 * 5 4 2 24 24 H 1.09000 * 109.58519 * 294.82742 * 6 5 4 25 25 H 1.09003 * 109.58492 * 174.40633 * 6 5 4 26 26 H 0.97005 * 120.00034 * 179.97438 * 11 10 8 27 27 H 1.09005 * 109.58590 * 293.81869 * 16 7 6 28 28 H 1.08997 * 109.70492 * 173.46775 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9969 1.3187 0.0000 4 6 2.0408 -0.7227 1.2487 5 6 3.5707 -0.6954 1.2660 6 6 4.1052 -1.4267 0.0306 7 7 3.5047 -0.8288 -1.1696 8 6 4.2936 -0.3788 -2.1943 9 1 5.2962 -0.0321 -1.9918 10 6 3.8048 -0.3681 -3.4935 11 7 2.7415 -1.0796 -3.8025 12 14 4.6562 0.6561 -4.8034 13 1 6.0615 0.1999 -4.9526 14 1 3.9438 0.4972 -6.0966 15 1 4.6398 2.0857 -4.4022 16 6 2.0413 -0.7235 -1.2497 17 1 -0.3632 0.5138 -0.8901 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 1.6581 -0.2238 2.1391 21 1 1.6966 -1.7569 1.2359 22 1 3.9332 -1.1903 2.1669 23 1 3.9163 0.3384 1.2546 24 1 3.8375 -2.4819 0.0863 25 1 5.1895 -1.3246 -0.0138 26 1 2.3997 -1.0718 -4.7103 27 1 1.6052 -1.7213 -1.2984 28 1 1.7616 -0.1587 -2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261326718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:13 Heat of formation + Delta-G solvation = -42.398091 kcal Electronic energy + Delta-G solvation = -12326.454161 eV Core-core repulsion = 10098.887509 eV Total energy + Delta-G solvation = -2227.566652 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.64183 -37.01318 -33.20649 -31.58871 -29.94745 -26.12287 -25.31210 -22.21723 -20.85062 -18.90304 -16.78882 -15.38734 -14.66136 -14.28085 -14.18091 -13.71461 -13.36507 -12.67356 -12.42827 -11.86223 -11.74967 -11.59100 -11.21208 -10.84769 -10.77076 -10.53419 -10.38168 -10.11599 -9.83768 -9.46001 -9.33918 -8.46893 -6.65785 -5.77463 -3.19550 3.41779 3.46784 3.49918 4.52279 5.19598 5.24670 5.35350 5.46275 5.56106 5.74760 5.79281 5.98972 6.15613 6.26698 6.36473 6.39486 6.48103 6.58673 6.79738 6.87950 7.02547 7.28482 7.54141 7.81541 8.46041 9.21018 9.84907 10.41058 11.31618 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.048780 B = 0.015102 C = 0.013585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.864552 B = 1853.603364 C = 2060.567714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 F -0.211 7.211 4 C -0.127 4.127 5 C -0.137 4.137 6 C 0.144 3.856 7 N -0.588 5.588 8 C -0.249 4.249 9 H 0.066 0.934 10 C 0.002 3.998 11 N -0.906 5.906 12 Si 0.904 3.096 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.283 1.283 16 C 0.158 3.842 17 H 0.064 0.936 18 H 0.054 0.946 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.255 0.745 27 H 0.033 0.967 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 0.362 7.456 7.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 F -0.192 7.192 4 C -0.165 4.165 5 C -0.176 4.176 6 C 0.017 3.983 7 N -0.310 5.310 8 C -0.379 4.379 9 H 0.083 0.917 10 C -0.196 4.196 11 N -0.551 5.551 12 Si 0.734 3.266 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.209 1.209 16 C 0.031 3.969 17 H 0.083 0.917 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.833 0.364 7.268 7.809 hybrid contribution 0.326 0.579 -0.668 0.942 sum -2.507 0.942 6.600 7.122 Atomic orbital electron populations 1.22270 0.95249 1.02661 1.02189 1.21812 0.92822 0.78945 0.99902 1.92769 1.90436 1.38215 1.97804 1.21955 0.97302 1.00565 0.96724 1.22001 0.94888 1.01806 0.98920 1.20954 0.96757 0.94050 0.86510 1.43928 1.01294 1.69289 1.16499 1.19138 0.97881 1.35220 0.85620 0.91676 1.25035 0.98562 0.98971 0.97051 1.70000 1.25822 1.40361 1.18926 0.86339 0.78881 0.80634 0.80774 1.20835 1.21592 1.20942 1.21323 0.84210 0.97475 0.93923 0.91724 0.92719 0.91304 0.92760 0.91226 0.92827 0.91830 0.96331 0.92607 0.93555 0.94872 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.94 37.16 0.33 -2.42 15 2 C 0.09 1.75 1.27 -90.50 -0.12 1.63 15 3 F -0.21 -4.89 16.20 2.25 0.04 -4.85 15 4 C -0.13 -2.27 4.97 -26.69 -0.13 -2.40 15 5 C -0.14 -2.54 5.96 -26.62 -0.16 -2.70 15 6 C 0.14 3.13 6.52 -3.71 -0.02 3.10 15 7 N -0.59 -15.38 2.97 -172.32 -0.51 -15.89 15 8 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 15 9 H 0.07 1.82 7.89 -52.48 -0.41 1.41 15 10 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 15 11 N -0.91 -26.70 11.19 55.49 0.62 -26.07 15 12 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 15 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 15 H -0.28 -6.99 7.11 56.52 0.40 -6.58 15 16 C 0.16 3.87 4.33 -3.71 -0.02 3.85 15 17 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 18 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 19 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 1.27 7.74 -51.93 -0.40 0.87 15 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 25 H 0.06 1.19 7.93 -51.93 -0.41 0.77 15 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 15 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.10 2.67 6.07 -51.93 -0.31 2.36 15 LS Contribution 230.83 15.07 3.48 3.48 Total: -1.00 -30.31 230.83 -5.81 -36.12 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -4.06 Total: -3.84 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.34 Total: -6.21 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.11 Total: -41.96 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.85 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.31 -5.81 -36.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.280 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds