Wall clock time and date at job start Mon Mar 30 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.49740 * 2 1 4 4 C 1.53047 * 109.49569 * 120.06154 * 2 1 3 5 5 C 1.53028 * 109.53907 * 181.28489 * 4 2 1 6 6 C 1.53191 * 109.34012 * 298.68475 * 5 4 2 7 7 N 1.46922 * 108.77748 * 54.62166 * 6 5 4 8 8 C 1.36929 * 120.63497 * 126.41345 * 7 6 5 9 9 H 1.08004 * 120.00227 * 331.82156 * 8 7 6 10 10 C 1.38814 * 120.00410 * 151.82252 * 8 7 6 11 11 N 1.31621 * 119.99743 * 343.07721 * 10 8 7 12 12 Si 1.86804 * 120.00357 * 163.08069 * 10 8 7 13 13 H 1.48496 * 109.47021 * 59.99782 * 12 10 8 14 14 H 1.48500 * 109.47255 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46880 * 299.99979 * 12 10 8 16 16 C 1.46933 * 118.73590 * 306.39196 * 7 6 5 17 17 H 1.09003 * 109.46516 * 60.00186 * 1 2 3 18 18 H 1.08997 * 109.47506 * 300.00464 * 1 2 3 19 19 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.45968 * 301.34147 * 4 2 1 21 21 H 1.09002 * 109.45516 * 61.29613 * 4 2 1 22 22 H 1.08998 * 109.49649 * 178.71867 * 5 4 2 23 23 H 1.09001 * 109.50162 * 58.65203 * 5 4 2 24 24 H 1.09000 * 109.58519 * 294.82742 * 6 5 4 25 25 H 1.09003 * 109.58492 * 174.40633 * 6 5 4 26 26 H 0.97005 * 120.00034 * 179.97438 * 11 10 8 27 27 H 1.09005 * 109.58590 * 293.81869 * 16 7 6 28 28 H 1.08997 * 109.70492 * 173.46775 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9969 1.3187 0.0000 4 6 2.0408 -0.7227 1.2487 5 6 3.5707 -0.6954 1.2660 6 6 4.1052 -1.4267 0.0306 7 7 3.5047 -0.8288 -1.1696 8 6 4.2936 -0.3788 -2.1943 9 1 5.2962 -0.0321 -1.9918 10 6 3.8048 -0.3681 -3.4935 11 7 2.7415 -1.0796 -3.8025 12 14 4.6562 0.6561 -4.8034 13 1 6.0615 0.1999 -4.9526 14 1 3.9438 0.4972 -6.0966 15 1 4.6398 2.0857 -4.4022 16 6 2.0413 -0.7235 -1.2497 17 1 -0.3632 0.5138 -0.8901 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 -1.0276 -0.0005 20 1 1.6581 -0.2238 2.1391 21 1 1.6966 -1.7569 1.2359 22 1 3.9332 -1.1903 2.1669 23 1 3.9163 0.3384 1.2546 24 1 3.8375 -2.4819 0.0863 25 1 5.1895 -1.3246 -0.0138 26 1 2.3997 -1.0718 -4.7103 27 1 1.6052 -1.7213 -1.2984 28 1 1.7616 -0.1587 -2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261326718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:13 Heat of formation + Delta-G solvation = -60.832345 kcal Electronic energy + Delta-G solvation = -12327.253530 eV Core-core repulsion = 10098.887509 eV Total energy + Delta-G solvation = -2228.366022 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.36480 -38.76774 -35.09166 -33.26748 -31.82390 -27.76053 -27.21834 -24.03741 -22.52004 -20.59391 -18.81699 -17.22109 -16.36434 -16.04376 -15.93779 -15.51222 -15.16591 -14.42795 -14.04799 -13.46712 -13.38235 -13.01859 -12.96816 -12.71016 -12.65201 -12.40711 -12.19109 -11.83887 -11.68111 -11.09946 -11.04633 -10.59864 -8.70812 -7.91400 -5.36654 1.43170 1.47154 1.53450 2.48502 3.22145 3.59301 3.76082 3.90460 3.96272 4.12903 4.32701 4.50966 4.69509 4.80694 4.86141 4.90525 5.02686 5.12255 5.23702 5.25812 5.40060 5.48775 5.60434 5.62672 6.35545 7.09922 7.80720 8.31857 9.14804 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.048780 B = 0.015102 C = 0.013585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.864552 B = 1853.603364 C = 2060.567714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 F -0.230 7.230 4 C -0.123 4.123 5 C -0.129 4.129 6 C 0.136 3.864 7 N -0.611 5.611 8 C -0.266 4.266 9 H 0.062 0.938 10 C -0.049 4.049 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.162 3.838 17 H 0.053 0.947 18 H 0.082 0.918 19 H 0.086 0.914 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.052 0.948 26 H 0.252 0.748 27 H 0.023 0.977 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 0.402 8.932 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 F -0.211 7.211 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.011 3.989 7 N -0.334 5.334 8 C -0.396 4.396 9 H 0.080 0.920 10 C -0.245 4.245 11 N -0.580 5.580 12 Si 0.794 3.206 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.210 1.210 16 C 0.036 3.964 17 H 0.072 0.928 18 H 0.101 0.899 19 H 0.105 0.895 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.111 0.889 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.043 0.399 8.774 9.295 hybrid contribution 0.417 0.527 -1.103 1.292 sum -2.626 0.927 7.671 8.161 Atomic orbital electron populations 1.22229 0.92159 1.04204 1.03087 1.21920 0.95231 0.77738 0.99123 1.92732 1.90926 1.39574 1.97824 1.21970 0.96496 1.01452 0.96177 1.21905 0.95647 1.00592 0.98611 1.21155 0.96708 0.94592 0.86454 1.44229 1.01857 1.70036 1.17266 1.19444 0.98220 1.35202 0.86753 0.92003 1.25786 0.99541 1.00146 0.98998 1.70138 1.27149 1.41626 1.19038 0.85362 0.78303 0.78826 0.78135 1.19718 1.21478 1.20962 1.21147 0.83809 0.96784 0.94710 0.92761 0.89923 0.89475 0.89643 0.89565 0.88878 0.93570 0.95737 0.92902 0.93934 0.95898 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 8.94 71.98 0.64 -4.27 15 2 C 0.08 3.14 1.27 -10.72 -0.01 3.12 15 3 F -0.23 -10.43 16.20 44.97 0.73 -9.70 15 4 C -0.12 -3.95 4.97 30.62 0.15 -3.80 15 5 C -0.13 -4.43 5.96 30.67 0.18 -4.25 15 6 C 0.14 5.79 6.52 86.36 0.56 6.35 15 7 N -0.61 -32.15 2.97 -699.10 -2.08 -34.23 15 8 C -0.27 -15.40 9.58 84.04 0.81 -14.59 15 9 H 0.06 3.52 7.89 -2.91 -0.02 3.49 15 10 C -0.05 -2.86 4.92 84.86 0.42 -2.44 15 11 N -0.93 -56.27 11.19 21.65 0.24 -56.03 15 12 Si 0.97 46.46 29.59 68.60 2.03 48.49 15 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 14 H -0.29 -13.72 7.11 99.48 0.71 -13.01 15 15 H -0.28 -13.51 7.11 99.48 0.71 -12.81 15 16 C 0.16 8.03 4.33 86.36 0.37 8.40 15 17 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 18 H 0.08 2.10 8.14 -2.39 -0.02 2.09 15 19 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 20 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 21 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.05 1.75 7.74 -2.39 -0.02 1.73 15 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.05 2.22 7.93 -2.39 -0.02 2.20 15 26 H 0.25 14.64 8.31 -92.70 -0.77 13.86 15 27 H 0.02 1.16 8.14 -2.38 -0.02 1.14 15 28 H 0.06 3.23 6.07 -2.39 -0.01 3.21 15 Total: -1.00 -65.69 230.83 5.17 -60.53 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.12 Total: 2.40 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 3.12 Total: -11.46 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -1.84 Total: -90.26 kcal Atomic # 9 Polarization: -10.43 SS G_CDS: 0.73 Total: -9.70 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -65.69 5.17 -60.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.306 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds