Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47096 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.47146 * 29.99617 * 3 2 1 6 6 H 1.48506 * 109.47256 * 149.99809 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00702 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99479 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.52430 * 300.12426 * 9 7 2 11 11 F 1.39892 * 109.47062 * 299.87711 * 10 9 7 12 12 C 1.53117 * 109.52255 * 179.97438 * 9 7 2 13 13 C 1.53044 * 109.27792 * 297.68802 * 12 9 7 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 9 15 15 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 14 13 17 17 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.46798 * 59.87345 * 10 9 7 19 19 H 1.08997 * 109.47078 * 179.87155 * 10 9 7 20 20 H 1.09001 * 109.50874 * 177.74982 * 12 9 7 21 21 H 1.09000 * 109.50461 * 57.62502 * 12 9 7 22 22 H 1.09002 * 109.46396 * 60.83566 * 13 12 9 23 23 H 1.08994 * 109.46485 * 180.81491 * 13 12 9 24 24 H 1.00904 * 111.00225 * 185.83346 * 14 13 12 25 25 H 1.08995 * 109.46742 * 178.23410 * 15 14 13 26 26 H 1.09004 * 109.45381 * 58.25744 * 15 14 13 27 27 H 1.08997 * 109.50308 * 299.23764 * 16 15 14 28 28 H 1.08996 * 109.53785 * 179.13596 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3681 -2.5798 1.2475 11 9 1.1695 -2.5075 2.3918 12 6 2.2449 -3.6639 0.0005 13 6 3.0835 -3.6125 -1.2787 14 7 2.1999 -3.6994 -2.4483 15 6 1.2679 -2.5658 -2.4954 16 6 0.3752 -2.5859 -1.2525 17 1 -0.4850 0.8400 -0.0004 18 1 -0.3390 -1.7504 1.2462 19 1 -0.1782 -3.5230 1.2454 20 1 1.7002 -4.6072 0.0409 21 1 2.8996 -3.5836 0.8683 22 1 3.6386 -2.6750 -1.3117 23 1 3.7824 -4.4489 -1.2886 24 1 2.7346 -3.7632 -3.3016 25 1 0.6483 -2.6418 -3.3889 26 1 1.8316 -1.6332 -2.5226 27 1 -0.1990 -3.5121 -1.2318 28 1 -0.3065 -1.7358 -1.2796 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = -63.289843 kcal Electronic energy + Delta-G solvation = -12452.218588 eV Core-core repulsion = 10223.746001 eV Total energy + Delta-G solvation = -2228.472587 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.04997 -37.81675 -33.37252 -30.95561 -29.60684 -25.52817 -25.10804 -21.89415 -20.75541 -18.61003 -15.90056 -15.54350 -14.89017 -14.25948 -14.00453 -13.64607 -13.58481 -12.74790 -12.52939 -11.98808 -11.36460 -11.09402 -10.93006 -10.75245 -10.58333 -10.23934 -9.92618 -9.65257 -9.13906 -8.90718 -8.70334 -8.36718 -7.58694 -6.03332 -4.10415 3.26417 3.34267 3.38360 4.39022 5.08893 5.22934 5.90107 6.01591 6.12102 6.26747 6.33844 6.47334 6.65079 6.73355 6.77768 6.96139 7.04462 7.07813 7.21468 7.46901 7.55205 7.62120 7.88258 8.14009 8.19342 8.39947 8.86670 9.53794 10.98444 Molecular weight = 187.11amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.020027 C = 0.016253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.475526 B = 1397.792680 C = 1722.311989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.491 4.491 8 H 0.056 0.944 9 C 0.043 3.957 10 C 0.068 3.932 11 F -0.234 7.234 12 C -0.101 4.101 13 C 0.069 3.931 14 N -0.694 5.694 15 C 0.072 3.928 16 C -0.100 4.100 17 H 0.261 0.739 18 H 0.099 0.901 19 H 0.024 0.976 20 H 0.042 0.958 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.323 0.677 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -3.560 -2.624 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.042 3.958 10 C 0.012 3.988 11 F -0.216 7.216 12 C -0.139 4.139 13 C -0.060 4.060 14 N -0.324 5.324 15 C -0.056 4.056 16 C -0.138 4.138 17 H 0.072 0.928 18 H 0.117 0.883 19 H 0.042 0.958 20 H 0.061 0.939 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.105 -3.829 -2.267 4.584 hybrid contribution 1.096 1.650 -0.242 1.995 sum 2.201 -2.179 -2.508 3.985 Atomic orbital electron populations 1.69703 1.05770 1.26488 1.51307 1.24904 0.94886 0.98980 0.94927 0.86597 0.80031 0.83538 0.77908 1.20875 1.21176 1.19970 1.21018 0.92755 0.89681 1.49476 0.92611 1.18708 0.92449 0.93455 0.91193 1.22189 0.93426 1.00487 0.82650 1.92586 1.77355 1.97983 1.53658 1.21563 0.98447 0.98303 0.95604 1.21775 0.94047 0.98764 0.91407 1.60439 1.21550 1.45836 1.04585 1.21784 0.94520 0.91338 0.97995 1.21486 0.98024 1.00323 0.93965 0.92834 0.88342 0.95751 0.93922 0.92758 0.94587 0.93273 0.86169 0.93489 0.94248 0.95520 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 9.36 55.43 0.52 -23.41 15 2 C 0.06 1.68 5.15 -17.82 -0.09 1.59 15 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.49 -12.95 5.94 -34.44 -0.20 -13.15 15 8 H 0.06 1.50 6.87 -52.49 -0.36 1.14 15 9 C 0.04 1.03 0.36 -155.53 -0.06 0.97 15 10 C 0.07 1.65 6.15 37.16 0.23 1.88 15 11 F -0.23 -5.98 16.61 2.25 0.04 -5.95 15 12 C -0.10 -2.21 4.69 -26.65 -0.12 -2.34 15 13 C 0.07 1.36 6.34 -3.83 -0.02 1.34 15 14 N -0.69 -13.17 6.84 -113.83 -0.78 -13.95 15 15 C 0.07 1.51 6.34 -3.84 -0.02 1.48 15 16 C -0.10 -2.29 4.70 -26.65 -0.13 -2.42 15 17 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 18 H 0.10 2.57 6.06 -51.93 -0.31 2.26 15 19 H 0.02 0.54 8.14 -51.93 -0.42 0.11 15 20 H 0.04 0.90 8.14 -51.93 -0.42 0.47 15 21 H 0.05 1.20 7.88 -51.93 -0.41 0.79 15 22 H 0.04 0.76 6.78 -51.93 -0.35 0.41 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.32 5.22 8.90 -39.29 -0.35 4.87 15 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.04 0.90 7.31 -51.93 -0.38 0.52 15 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 28 H 0.10 2.40 6.05 -51.93 -0.31 2.09 15 LS Contribution 222.20 15.07 3.35 3.35 Total: -1.00 -27.08 222.20 -6.05 -33.12 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.73 Total: 1.45 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.42 Total: -10.64 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.26 Total: -37.36 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.04 Total: -5.95 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.08 -6.05 -33.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.165 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds